View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5434_high_7 (Length: 405)
Name: NF5434_high_7
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 188 - 384
Target Start/End: Complemental strand, 36444620 - 36444423
Alignment:
| Q |
188 |
gtagttgttttcgcgatgaatatgatgtttttatcttagctaaaattaatggaatttcatatatgtgtc--gtagtggtgagggaggctcttgtcttatt |
285 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
36444620 |
gtagttgtttttgtgatgaatatggtgtttttatcttagctaaaattaatggaatttcatatatgtgtctcgtagcggtgagggagt-tcttgtcttatt |
36444522 |
T |
|
| Q |
286 |
ttatacttttcaaatgattcatgacatgcaatttgacaacgtcgattttgggattgcttttaagattataaattttgtgattgattctaagatgtgttt |
384 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36444521 |
ttatactttccaaatgattcatgatatgtaatttgacaacgtcgattttggaattacttttaagattataaattttgtgattgattctaagatgtgttt |
36444423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 36444860 - 36444713
Alignment:
| Q |
1 |
tttctttgatgccatttttgtgtggcaactgtgaaatgaggtagggtagagggaagaaggaacaaagggttttgggggtttagtatggtcacgtgtgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36444860 |
tttctttgatgccatttttgtgtggcaactgtgaaatgaggtagggtagagggaagaaggaacaaagggttttgggggtttagtatggtcacgtgtgttg |
36444761 |
T |
|
| Q |
101 |
c--tactgtagctcgcttggttgaatttgtttggacaaatttttcact |
146 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36444760 |
ctatactgtagctcgcttggttgaatttgtttggacaaatttttcact |
36444713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 17119144 - 17119172
Alignment:
| Q |
307 |
tgacatgcaatttgacaacgtcgattttg |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17119144 |
tgacatgcaatttgacaacgtcgattttg |
17119172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University