View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5434_low_1 (Length: 567)
Name: NF5434_low_1
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 306 - 547
Target Start/End: Original strand, 9733636 - 9733877
Alignment:
| Q |
306 |
aatgaaaatcaaagatcacttttttgtttaactcatttgatttcacttgttgaagctgcaaaaccaaaaccaactttttgaagagttgtttttcacttcc |
405 |
Q |
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| T |
9733636 |
aatgaaaatcaaagatcacttttttgtttaactcatttgatttcacttgttgaagctgcaaaaccaaaaccaactttttgaagagttgtttttctcttcc |
9733735 |
T |
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| Q |
406 |
ttcctttaggtgatgtcgttgtctttgattgtttctcccaaaagaacctgaacgaatccacgttaccaacttgccaacgttgttgcttttttctgctctt |
505 |
Q |
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| T |
9733736 |
ttcctttaggtgatgtctttgtctttgattgtttctcccaaaagaacctgaacgaatccacgttaccaacttgccaacgttgttgcttttttctgctctt |
9733835 |
T |
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| Q |
506 |
gtttcataataatgttgcagttcttcacagtgctgtttcttt |
547 |
Q |
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| T |
9733836 |
gtttcataataatgttgcagttcttcacagtgctgtttcttt |
9733877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 9733392 - 9733531
Alignment:
| Q |
69 |
ctccttgaaagtagccactaatagattaacccatcaataactcatgagagagaaaacatgaaccagaaatgatgagagttaaatgcatgtttttggtttt |
168 |
Q |
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| T |
9733392 |
ctccttgaaagtagccactaatagattaacccatcaataactcatgagagagaaaacatgaaccagaaatgatgagagttaaatgcatgtttttggtttt |
9733491 |
T |
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| Q |
169 |
tcagttacacacataaaaataaggtagtactaacttcatg |
208 |
Q |
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| T |
9733492 |
tcagttacacacataaaaataaggtagtactaacttcatg |
9733531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9733327 - 9733365
Alignment:
| Q |
1 |
gtgccattcaccaacaacaaagaacaaaacaacaactat |
39 |
Q |
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| T |
9733327 |
gtgccattcaccaacaacaaagaacaaaacaacaactat |
9733365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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