View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5434_low_10 (Length: 347)

Name: NF5434_low_10
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5434_low_10
NF5434_low_10
[»] chr2 (1 HSPs)
chr2 (34-328)||(38747651-38747948)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 38747948 - 38747651
Alignment:
Q  34 ataattctccaacttcaacactttttggtatgtctcatttttcttcacctccggcatcaccacctatgtctccgatgaagccacgaaacggtgtttcatc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38747948 ataattctccaacttcaacactttttggtatgtctcatttttcttcacctccggcatcaccacctatgtctccgatgaagccacgaaacggtgtttcatc 38747849  T
Q  134 gctttcacgctatggttcttcgattaatagtaacaatcttcgttatagagacatgcttattgatcttttgggttcttttgaagggatgaatttcaatgac 233  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38747848 gctttcacgctacggttcttcaattaatagtaacaatcttcgttatagagacatgcttattgatcttttgggttcttttgaagggatgaatttcaatgac 38747749  T
Q  234 ggttca---nnnnnnnnnnnnnnnnnacctgtttctgtttctgctgctaaagcacttcagatacaaaacatgggttatcttgaatctcttgatgttcc 328  Q
    ||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38747748 ggttcatcttctgcttcttcttcttcacctgtttctgtttctgctgctaaagcacttcagatacaaaacatgggttatcttgaatctcttgatgttcc 38747651  T

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