View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5434_low_11 (Length: 329)
Name: NF5434_low_11
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_11 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 9488861 - 9489177
Alignment:
| Q |
13 |
agcagagaaatctaaggagacaaaagcttgggtaaaccaactcaatgaccagcttcagaaccgcgagttcgaagaagccaaaaaatagaacatttgatct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9488861 |
agcagagaaatctaaggagacaaaagcttgggtaaaccaacccaatgaccagcttcagaaccgcgagttcgaagaagccaaaaaatagaacatttgatct |
9488960 |
T |
|
| Q |
113 |
aggagcattcattttttctacaatgtgtttctttcaccttcaggacaaagtgaagcttttgcgatgagtattgttagttagttcaatagacaatgtattt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9488961 |
aggagcattcattttttctacaatgtgtttctttcaccttcaggacaaagtgaagcttttgcgatgagtattgttagtaagttcaatagacaatgtattt |
9489060 |
T |
|
| Q |
213 |
gtgtgtttatgaatcgttttaaatagaataagggtgagaaaacagattctctaactcctagaggatgattatttcccgcggttagaatttatgttttccg |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
9489061 |
gtgtgtttaggaatcgttttaaatagaataagggtgagaaaacagattctctaactcctagaggttgattatttccagcggttagcatttatgttttccg |
9489160 |
T |
|
| Q |
313 |
accgtttattttgtgtc |
329 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
9489161 |
acagtttattttgtgtc |
9489177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University