View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5434_low_12 (Length: 283)
Name: NF5434_low_12
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 25 - 267
Target Start/End: Complemental strand, 41901369 - 41901127
Alignment:
| Q |
25 |
tcctaacaactctattcgttaattaatgtgtttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggaaaacaacaag |
124 |
Q |
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| T |
41901369 |
tcctaataactctattcgttaattaatgtgtttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggagaacaaccag |
41901270 |
T |
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| Q |
125 |
aagccccnnnnnnncaaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccat |
224 |
Q |
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| T |
41901269 |
aagcccctttttttcaaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccgtattctgcttccaataccttgctaattgatgacaaaccat |
41901170 |
T |
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| Q |
225 |
acaagtccttgcttaatccggtagttcacttgtttttactaat |
267 |
Q |
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| T |
41901169 |
acaagtccttgcttaatccggtagttcacttgtttttactaat |
41901127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 41896303 - 41896097
Alignment:
| Q |
55 |
tttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggaaaacaacaagaagccccnnnnnnncaaggaactgaaagaa |
154 |
Q |
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| T |
41896303 |
tttcatatatttattttaggatcaacataaatgtagagattctggttttaaatccttggagaacaataagaaacctctctttttcaaagaactgaaaaaa |
41896204 |
T |
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| Q |
155 |
gtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatccggtagttcact |
254 |
Q |
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| T |
41896203 |
gtgtgggacactatcaagaaaggaggaccgtattctgcttcaaatacgttgctgatcgatgacaaaccatacaagtctttccttaatccggtaattcact |
41896104 |
T |
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| Q |
255 |
tgttttt |
261 |
Q |
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| T |
41896103 |
tgttttt |
41896097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 41891246 - 41891125
Alignment:
| Q |
140 |
aaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgctta |
239 |
Q |
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| T |
41891246 |
aaggaactaaaagaagtgtgggatgatgtcaagaaaggatgtccatattctgcttcaaataccttgatgattgatgccagaccatacaggtccttcctta |
41891147 |
T |
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| Q |
240 |
atccggtagttcacttgttttt |
261 |
Q |
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| T |
41891146 |
atccgttaatgcacatgttttt |
41891125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 34454209 - 34454271
Alignment:
| Q |
167 |
gtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaag |
229 |
Q |
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| T |
34454209 |
gtcaagaaaggaggtccatattctgcttctaatactttgatgattgatgacaaaccatacaag |
34454271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 41885185 - 41885112
Alignment:
| Q |
170 |
aagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatcc |
243 |
Q |
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| T |
41885185 |
aagaaaagaggcccatattctgcttctaatactttgatgattgatgacaaagcatataagtccttcattaatcc |
41885112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 41829477 - 41829544
Alignment:
| Q |
167 |
gtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtcctt |
234 |
Q |
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| T |
41829477 |
gtcaagaaaggaggctcatattctccttctaatactttgatgattgatgacaaagcatataagtcctt |
41829544 |
T |
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