View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5434_low_14 (Length: 266)
Name: NF5434_low_14
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 36444853 - 36445114
Alignment:
| Q |
1 |
caaagaaaccatggagaataatcccaagaccacttctcgaaacagtcctcaacaaccacgctcaacaccaccgtgtccatcaaccactcatcctccacgg |
100 |
Q |
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| T |
36444853 |
caaagaaaccatggagaataatcccaagaccacttctcgaaacagtcctcaacaaccacgctcaacaccaccgtgtccatcaaccactcatcctccacgg |
36444952 |
T |
|
| Q |
101 |
tccacgtggcgtcggaaaaaccaccttcattctcgaacgcgtactcaacgactggaacaaaggcccacacttcaccagttacgtcgatttcgcccaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36444953 |
tccacgtggcgtcggaaaaaccaccttcattctcgaacgcgtactcaacgactggaacaaaggcccacacttcaccagttacgtcgatttcgcccaacta |
36445052 |
T |
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| Q |
201 |
gcccagcccagcatatcaagcccatgggcttcatggtccaacttccctccttcatctctctc |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36445053 |
gcccagcccagcatatcaagcccatgggcttcatggtccaacttccctcctccatctctctc |
36445114 |
T |
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