View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5434_low_15 (Length: 250)

Name: NF5434_low_15
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5434_low_15
NF5434_low_15
[»] chr7 (6 HSPs)
chr7 (9-250)||(41901481-41901722)
chr7 (71-156)||(41896542-41896627)
chr7 (71-155)||(41829067-41829151)
chr7 (71-155)||(41885561-41885645)
chr7 (71-139)||(41891821-41891889)
chr7 (71-123)||(34453750-34453802)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 41901722 - 41901481
Alignment:
Q  9 ataatacttgaatgaattttaattaatgactattaattagtcgtaaatttggtgcagcttttaagaggccatttagcgaagaatttatgaaattctgcct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |    
T  41901722 ataatacttgaatgaattttaattaatgactattaattagtcggaaatttggtgcagtttttaagaggccatttagcgaagaatttattaaattctgctt 41901623  T
Q  109 ggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaacgctgatcttctatttcatttcttcccttttttcctctttaaatttgattaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41901622 ggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaacgctgatcttctatttcatttcttcccttttttcctctttaaatttgattaat 41901523  T
Q  209 tacttgatcttaaactgtatcctttttattgtaattgataat 250  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  41901522 tacttgatcttaaactgtatcctttttattgtaattaataat 41901481  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 41896627 - 41896542
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaac 156  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||  | ||||||||||||||||||||||||||    
T  41896627 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaac 41896542  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 41829067 - 41829151
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa 155  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||  | ||| ||||||||| | |||||||||    
T  41829067 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa 41829151  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 41885645 - 41885561
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa 155  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||  | ||| ||||||||| | |||||||||    
T  41885645 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa 41885561  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 41891889 - 41891821
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttct 139  Q
    ||||| |||||||  ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  41891889 aagagaccatttactgaagaatttatgaaattctgcttagaaagatttgaagtgggcctctggtcttct 41891821  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 34453750 - 34453802
Alignment:
Q  71 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagt 123  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  34453750 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagt 34453802  T

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