View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5434_low_2 (Length: 491)
Name: NF5434_low_2
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_2 |
 | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
| [»] scaffold0099 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0018 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 139649 - 140121
Alignment:
| Q |
1 |
acacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaaccagaattattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
139649 |
acacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattccaatcatgtctctaacttcattcgcagccaaaccagaattattat |
139748 |
T |
|
| Q |
101 |
ctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaatggaaaaaggtgac |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
139749 |
ctccaagattgccacatttcattaaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggagaattcagatggaaaaaggtgac |
139848 |
T |
|
| Q |
201 |
agtaatttatgaacttaataatgacttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctgagattgataaccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
139849 |
agtaatttatgaacttaataatgacttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctgagattgataaccat |
139948 |
T |
|
| Q |
301 |
ttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaaagaagagtaatagggtattcttgattg |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
139949 |
ttagcttttccttcgttagcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaaagaagagtaatagggtattcttgattg |
140048 |
T |
|
| Q |
401 |
ttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
140049 |
ttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
140121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 148258 - 148730
Alignment:
| Q |
1 |
acacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaaccagaattattat |
100 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
148258 |
acacacagcgaagcaacactggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaacaaaccagaattattat |
148357 |
T |
|
| Q |
101 |
ctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaatggaaaaaggtgac |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
148358 |
ctcctagattgccacatttcatccaagtaggggatgatattaacctccacatgagatgtattgcagcaattgtaggagaatttaaatggaaaaaagtgat |
148457 |
T |
|
| Q |
201 |
agtaatttatgaacttaataatgacttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctgagattgataaccat |
300 |
Q |
| |
|
|||||||||| ||||||||||||| || |||| ||||| | |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
148458 |
agtaatttattaacttaataatgatttttcctctgatccagaaatactacttagcctctcttattctctaagacttgttggttctgagattgatgaccat |
148557 |
T |
|
| Q |
301 |
ttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaaagaagagtaatagggtattcttgattg |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
148558 |
ttagcttttccttcgttatcaacactttcagacccaaaatctacaattgaagaagagcttaataagctgaaaagaaagagtaatagggtattcttgattg |
148657 |
T |
|
| Q |
401 |
ttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
473 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
148658 |
ttcattcttctttagagttggctaatattatttgtgagaaagcaaaacaaataggtttgatggaaaaaggttc |
148730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 24896971 - 24897446
Alignment:
| Q |
1 |
acacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaaccagaattattat |
100 |
Q |
| |
|
|||||||| ||||||||| | || |||||| ||| |||| |||||||||| ||||||| |||||||||||||||| || | || || ||||||||||| |
|
|
| T |
24896971 |
acacacaacgaagcaacaattgctagtgaactcaacgacaacataaagaacactcctatcttgtctctaacttcatttgctggcagacaagaattattat |
24897070 |
T |
|
| Q |
101 |
ctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaatggaaaaaggtgac |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| ||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
24897071 |
ctcctagattgccacatttcatccaattaggagatgatattaaccatcacatccaatgcattgcagcaattgtaggagaattcagatggaaaaaggtgac |
24897170 |
T |
|
| Q |
201 |
agtaatttatgaacttaataat---gacttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctgagattgataac |
297 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||| ||||| | ||| |||| | |||||| |||| || | ||||||||||||||| ||||| | | |
|
|
| T |
24897171 |
agtaatttatgaacataataatgacgacttttcctctgatccagaaataatactttgtctctctaattctctcaaacttgttggttctgaaattgaaagc |
24897270 |
T |
|
| Q |
298 |
catttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaaagaagagtaatagggtattcttga |
397 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| || |||||| |||||||| |||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
24897271 |
catttagcttttccttctttatccacactttcagacgcagaatctacaattgaaaatgagcttaataagttgaaaaggaagagtaatagggtcttcttga |
24897370 |
T |
|
| Q |
398 |
ttgttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
473 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24897371 |
ttgttcgttcttctttagagttggctaatattatttgtgagaaagcaaaacaaataggtttgatggaaaaaggttc |
24897446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 24909074 - 24909549
Alignment:
| Q |
1 |
acacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaaccagaattattat |
100 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||| |||| |||||||||| ||||||| |||||||||||||||| || | || || ||||||||||| |
|
|
| T |
24909074 |
acacacaacgaagcaacacttgctagtgaattcgacgacaacataaagaacactcctatcttgtctctaacttcatttgctggcagacaagaattattat |
24909173 |
T |
|
| Q |
101 |
ctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaatggaaaaaggtgac |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || ||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||| | |
|
|
| T |
24909174 |
ctcctagattgccacatttcatccaactcggagatgatattaaccatcacatccaatgcattgcagcaattgtaggagaattcagatggaaaaaggtggc |
24909273 |
T |
|
| Q |
201 |
agtaatttatgaacttaataatgact---tggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctgagattgataac |
297 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||| ||||| | ||| |||| |||||||| |||| |||| ||||| ||||||||| ||||| | | |
|
|
| T |
24909274 |
agtaatttatgaacataataatgactacttttcctctgatccagaaataatacttagcctctccaattctcttaaacttgctggttctgaaattgaaagc |
24909373 |
T |
|
| Q |
298 |
catttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaaagaagagtaatagggtattcttga |
397 |
Q |
| |
|
||||||||| ||||||| ||||| || |||||||| || |||||| |||||||| |||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
24909374 |
catttagctattccttctttatccacactttcagacgcagaatctacaattgaaaatgagcttaataagttgaaaaggaagagtaatagggtcttcttga |
24909473 |
T |
|
| Q |
398 |
ttgttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
473 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24909474 |
ttgttcgttcttctttagagttggctaatattatttgtgagaaagcaaaacaaataggtttgatggaaaaaggttc |
24909549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 24986577 - 24987052
Alignment:
| Q |
1 |
acacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaaccagaattattat |
100 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||| |||| |||||||||| ||||||| |||||||||||||||| || | || || ||||||||||| |
|
|
| T |
24986577 |
acacacaaagaagcaacacttgctagtgaattcgacgacaacataaagaacaatcctatcttgtctctaacttcatttgctggcagacaagaattattat |
24986676 |
T |
|
| Q |
101 |
ctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaatggaaaaaggtgac |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||| | | ||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||| | |
|
|
| T |
24986677 |
ctcctagattgccacatttcatccaactcagagatgatattaaccatcacatccaatgcattgcagcaattgtaggagaattcagatggaaaaaggtggc |
24986776 |
T |
|
| Q |
201 |
agtaatttatgaacttaataatgac---ttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctgagattgataac |
297 |
Q |
| |
|
|||||||||||||| |||||||||| || |||| ||||| | ||| |||| |||||||| |||| |||| ||||| ||||||||| ||||| | | |
|
|
| T |
24986777 |
agtaatttatgaacataataatgacgacttttcctctgatccagaaataatacttagcctctccaattctcttaaacttgctggttctgaaattgaaagc |
24986876 |
T |
|
| Q |
298 |
catttagcttttccttcgttatcaactctttcagatccaaaatctatgattgaaaaagagcttaatagcttgaaaaagaagagtaatagggtattcttga |
397 |
Q |
| |
|
||||||||| ||||||| ||||| || |||||||| || |||||| |||||||| ||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
24986877 |
catttagctattccttctttatccacactttcagacgcagaatctacaattgaaaatgagcttaatgagttgaaaaggaagagtaatagggtcttcttga |
24986976 |
T |
|
| Q |
398 |
ttgttcattcttctttagagttggctaacattctttgtgaaaaagcaaaagaaataggtttgatggaaaaaggttc |
473 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24986977 |
ttgttcgttcttctttagagttggctaatattatttgtgagaaagcaaaacaaataggtttgatggaaaaaggttc |
24987052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 22739 - 22904
Alignment:
| Q |
62 |
tgtctctaacttcattcgcagccaaaccagaa-ttattatctccaagattgccacatttcattcaagtaggggatgatattaaccttca-catgc-aatg |
158 |
Q |
| |
|
|||||||||||||||| || | || || |||| ||||||||||| ||||||||||||||||| ||| | | ||||||||||||| ||| ||| | |||| |
|
|
| T |
22739 |
tgtctctaacttcatttgctggcagacaagaaattattatctcctagattgccacatttcatccaactcagagatgatattaaccatcaacatcccaatg |
22838 |
T |
|
| Q |
159 |
cattgcagcaattgtaggaaaattcaaatgg-aaaaaggtgacag-taatttatgaacttaataat |
222 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||||||| ||| |||||||||||| ||||||| |
|
|
| T |
22839 |
cattgcagcaattgtaggagaattcagatggaaaaaaggtggcagttaatttatgaacataataat |
22904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University