View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5434_low_20 (Length: 235)
Name: NF5434_low_20
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44733292 - 44733510
Alignment:
| Q |
1 |
tataataaaattaacatgattaaattagatgcaatggaactttacttggaagagttcgtgcagtttgttcttaagataacaatattcatgctccagcatt |
100 |
Q |
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| T |
44733292 |
tataataaaattaacatgattaaattagatgcaatggaactttacttggaagagttcgtgcaatttgttcttaagataacaatattcatgctccagcatt |
44733391 |
T |
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| Q |
101 |
tccaaagctcgtaaacatctgcaattaggcacatatatacttactagttagaact-atcactatatatgatatagccattatgcattttgtatcattgct |
199 |
Q |
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| T |
44733392 |
tccaacgctcgcaaacatctgcaattagacac----atacgtacaagttagaactcatcaatagatatgatatagccattatacattttgtatcattgct |
44733487 |
T |
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| Q |
200 |
gtattatgaatgaatgaatttga |
222 |
Q |
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| T |
44733488 |
gtattatgaatgaatgaatttga |
44733510 |
T |
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Back To:
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 2260676 - 2260588
Alignment:
| Q |
38 |
aactttacttggaagagttcgtgcagtttgttcttaagataacaatattcatgctccagcatttccaaagctcgtaaacatctgcaatt |
126 |
Q |
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| T |
2260676 |
aactttacttggaatagttcatgcaatttgttcttgagatagcaatattcatgttccagcatttccaacgctctgaagcatctgcaatt |
2260588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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