View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5434_low_21 (Length: 234)
Name: NF5434_low_21
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2070209 - 2069984
Alignment:
| Q |
1 |
ccaccactaggagtagctacatcgctgcaatttggtttgaaggggctggtggcggcgcctgtgagga-ggggaaaaagctgcgctgcaattcttctacaa |
99 |
Q |
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| T |
2070209 |
ccaccaccaggagtagctacatcgctgcaatttggattgaaggggctggtggcggcgcttgtgaggaaggggaaaaagctgcgctgcaattcttctacaa |
2070110 |
T |
|
| Q |
100 |
gcgactttgcatacttcgatacaaactcatcaaacaagggaataattgaatttgattctctgttaactgtcaaagttttctctaacattaatcttgttat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2070109 |
gcgactttgcatacttcgatacaaactcatcaaacaagggaataattgaatttgattctctgttaactgtcaaagttttctcta-----aatcttgttat |
2070015 |
T |
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| Q |
200 |
annnnnnnngaaggatgtgttcatctcactc |
230 |
Q |
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| |||||||||||||||||||||| |
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| T |
2070014 |
attttttttgaaggatgtgttcatctcactc |
2069984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2074555 - 2074330
Alignment:
| Q |
1 |
ccaccactaggagtagctacatcgctgcaatttggtttgaaggggctggtggcggcgcctgtgagga-ggggaaaaagctgcgctgcaattcttctacaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
2074555 |
ccaccactaggagtagctacatcgctgcaatttggattgaaggggctggtggcggcgctggtgaggaaggggaaaaagctgcgctgcaattcttctacaa |
2074456 |
T |
|
| Q |
100 |
gcgactttgcatacttcgatacaaactcatcaaacaagggaataattgaatttgattctctgttaactgtcaaagttttctctaacattaatcttgttat |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2074455 |
gcgactttgcatacttcgatacaaactcatcaaataagggaataattgaatttgattctctgttaactgtcaaagttttctcta-----aatcttgttat |
2074361 |
T |
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| Q |
200 |
annnnnnnngaaggatgtgttcatctcactc |
230 |
Q |
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| |||||||||||||||||||||| |
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| T |
2074360 |
attttttttgaaggatgtgttcatctcactc |
2074330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43031873 - 43031841
Alignment:
| Q |
1 |
ccaccactaggagtagctacatcgctgcaattt |
33 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
43031873 |
ccaccactagcagtagctacatcgctgcaattt |
43031841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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