View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5434_low_4 (Length: 482)
Name: NF5434_low_4
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 24 - 451
Target Start/End: Complemental strand, 29967738 - 29967317
Alignment:
| Q |
24 |
gctccgagtcctttgggtttatttgactcactccctcctgaaatactcctcaaaatcacaagactattaagccctaaacatgctgccaaactctgcctcg |
123 |
Q |
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| T |
29967738 |
gctccgagtcctttgggtttatttgactcactccctcctgacatactcctcaaaatcacaagactattaggccctaaacatgctgccaaactctgcctcg |
29967639 |
T |
|
| Q |
124 |
tttgcaagtcatggcgatctctcgtctccgataacgaactctgggctcattttcttcagactcaccagcctatacactttcactctattctcttctcaga |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29967638 |
tttgcaagtcatggcgatctctcgtctccgataacgaactctgggctcattttcttcagactcaccagcctatacactttcactctattctcttctcaga |
29967539 |
T |
|
| Q |
224 |
aactaatttaacctctggttaccctcttccgtaagttat----cataaagtaacggtaactaacttgtgttgtttaattggaactaataatttcatttca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29967538 |
aactaatttaacctctggttaccctcttccgtaagttatatatcataaagtaacggtaactaacttgtgttgtttaattggaactaataatttcatttca |
29967439 |
T |
|
| Q |
320 |
tttcatttcatttcagaatctttgatactcagacgacaccacacgtttcgtttaagcatgtttttggtcaccgagagcagcttcctcccgctattatcat |
419 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29967438 |
t----------ttcagaatctttgatactcagacgacaccacacgtttcgtttaagcatgtttttggtcaccgagagcagcttcctcccgctattatcat |
29967349 |
T |
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| Q |
420 |
cgacggttagttagttgcttacttagtttatg |
451 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29967348 |
cgacggttagttagttgcttacttagtttatg |
29967317 |
T |
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