View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5434_low_5 (Length: 451)
Name: NF5434_low_5
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 30859691 - 30860125
Alignment:
| Q |
1 |
ttataatgaggtaggagtatatagtaaagtaggaagaaatattgaaagtgatgaattgtgggtgtcacagctttagggcaataagatcattgttgaaaac |
100 |
Q |
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| T |
30859691 |
ttataatgaggtaggagtatatagtaaagtaggaagaaatattgaaagtgatgaattgtgggtgtcacagctttagggcaataagatcattgttcaaaac |
30859790 |
T |
|
| Q |
101 |
gaccttaagagtgagtaaacttcacaatggtttcaaaaatgaattggaaaatattgagggctgtaaagataagaatgcatttccactatatgatatgatg |
200 |
Q |
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| T |
30859791 |
gaccttaagagtgagtaaacttcacaatggtttcaaaaatgaattggaaaatattgagggctgtaaagataagaatgcatttccactatatgatatgatg |
30859890 |
T |
|
| Q |
201 |
ttgttggccacatcagttgacactactcattgcttaattggattgttccattttctcattatttcatctcatttgtcctcttgaagggtcgttatttgtt |
300 |
Q |
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| T |
30859891 |
ttgttggccacatcagttgacactactcattgcttaattggattgttccattttctcattatttcatctcatttgtcctcttgaagggtcgttatttgtt |
30859990 |
T |
|
| Q |
301 |
aaagtcatgtaaacacaaattaatctctaatagcccttcatattgtgagggaaatagattatctatggttagtagacattctagttaatcatttcagcta |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30859991 |
aaagtcatgtaaacacaaattaatctctaataacccttcatattgtgagggaaatagattatctatggttagtagacattctagttaatcatttcagcta |
30860090 |
T |
|
| Q |
401 |
ttgatcaaaattaaacaattgagattttgagtttt |
435 |
Q |
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| T |
30860091 |
ttgatcaaaattaaacaattgagattttgagtttt |
30860125 |
T |
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