View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5434_low_9 (Length: 378)
Name: NF5434_low_9
Description: NF5434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5434_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 23280243 - 23279892
Alignment:
| Q |
18 |
gatttcactgttttgattatgtttcatgtactgatttcgttaatttcagtggtgctcatgtttccaattttccggattctgatttcgttgccttt-gtgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
23280243 |
gatttcactgttttgattatgtttcatgtactgatttcgttaatttcagtggtgctcatgtttccaattttctggattctgatttcgttgccttttgtgc |
23280144 |
T |
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| Q |
117 |
taagttcgcaatttctagtctcattcatgatgacttcactgttctggttatgttcatgttgatttcgtttagttccatggtgctcatgtttcttgatttg |
216 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23280143 |
taagttcgcagtttctagtctcattcatgatgatttcactgttctggttatgttcatgttgatttcgtttagttccatggtgctcttgtttcttgatttg |
23280044 |
T |
|
| Q |
217 |
gttttagtatcatgtgattcnnnnnnnntcatcaagaatgcac---nnnnnnnnnnnnaattcaaggagatcagcattggtgtttgctttgtagattaag |
313 |
Q |
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||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23280043 |
gttttagtatcttgtgattc-aaaaaaatcatcaagaatgcactttttttttttttttaattcaaggagatcagcattggtgtttgctttgtagattaag |
23279945 |
T |
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| Q |
314 |
atatttagtgttgatggaagcatcatgnnnnnnnggtatctcattattgatat |
366 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23279944 |
atatttagtgttgatggaagcatcatgtttttttggtatctcattattgatat |
23279892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 23400275 - 23400582
Alignment:
| Q |
18 |
gatttcactgttttgattatgtttcatgtactgatttcgttaatttcagtggtgctcatgtttccaattttccggattctgatttcgttgccttt-gtgc |
116 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
23400275 |
gatttcactgttctgattatgtttcatgt--tgatttcgttaatttcagtggtgctcatgtttccaattttctggattctgatttcgttgccttttgtgc |
23400372 |
T |
|
| Q |
117 |
taagttcgcaatttctagtctcattcatgatgacttcactgttctggttatgttcatgttgatttcgtttagttccatggtgctcatgtttcttgatttg |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
23400373 |
taagttcgcaatttctagtctcattcatgatgatttcactgttctggttatgttcatgttgatttcgtttagttccatggtgcacatgttccttgatttg |
23400472 |
T |
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| Q |
217 |
gttttagtatcatgtgattcnnnnnnnntcatcaagaatgcac-nnnnnnnnnnnnaattcaaggagatcagcattggtgtttgctttgtagattaagat |
315 |
Q |
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|||||||| || |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23400473 |
gttttagtttcttgtgattcaaaaaatttcatcaagaatgcacttttctttttttcaattcaaggaaatcagcattggtgtttgctttgtagattaagat |
23400572 |
T |
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| Q |
316 |
atttagtgtt |
325 |
Q |
| |
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|||||||||| |
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| T |
23400573 |
atttagtgtt |
23400582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 23400273 - 23400336
Alignment:
| Q |
146 |
atgacttcactgttctggttatg-ttcatgttgatttcgtttagttccatggtgctcatgtttc |
208 |
Q |
| |
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|||| |||||||||||| ||||| ||||||||||||||||| | ||| ||||||||||||||| |
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| T |
23400273 |
atgatttcactgttctgattatgtttcatgttgatttcgttaatttcagtggtgctcatgtttc |
23400336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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