View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5435-Insertion-11 (Length: 211)
Name: NF5435-Insertion-11
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5435-Insertion-11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 11848341 - 11848137
Alignment:
| Q |
7 |
agtgaaactgttgtttctgatatacaagttctgaagtgaatttggcatgtatggaaaacctccagaaaactcattttcactgcaatcgaaacgagttaaa |
106 |
Q |
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| T |
11848341 |
agtgaaactgttgtttctgatatacaagttctgaagtgaatttggcatgtatggaaaacctccagaaaactcattttcactgcaatcgaaacgagttaaa |
11848242 |
T |
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| Q |
107 |
gcagtgagttgcattaattcttttggtaaagaaccttgaatattgagttgtcctaaattaatttctgtgaccgtcgttccgctacatgaaactcccttcc |
206 |
Q |
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| T |
11848241 |
gcagtgagttgcattaattcttttggtaaagaaccttgaatattgagttgtcctaaattaatttcagtgaccgtcgttccgctgcatgaaactcccttcc |
11848142 |
T |
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| Q |
207 |
atttg |
211 |
Q |
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| T |
11848141 |
atttg |
11848137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 11834925 - 11834815
Alignment:
| Q |
37 |
ctgaagtgaatttggcatgtatggaaaacctccaga-aaactcattttcactgcaatcgaaacgagttaaagcagtgagttgcattaattcttttggtaa |
135 |
Q |
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| T |
11834925 |
ctgaagtgaaattggcatgtaaggaaaatcaccagataaactg-tttccattgcattcaaaccgagttaactcagtgagttgcatcaattcttttggtaa |
11834827 |
T |
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| Q |
136 |
agaaccttgaat |
147 |
Q |
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| T |
11834826 |
agaaccttgaat |
11834815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 11858809 - 11858952
Alignment:
| Q |
7 |
agtgaaactgttgtttctgatatacaagttctgaagtgaatttggcatgtatggaaaacctccagaaaactcattttcactgcaatcgaaacgagttaaa |
106 |
Q |
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| T |
11858809 |
agtgaaattgttgttgttaatatacaaaaactgaagtgaacttggcatgtaaggaaaatcaccagataaagcgtttccattgcactcaaaacgatttaac |
11858908 |
T |
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| Q |
107 |
gcagtgagttgcattaattcttttggtaaagaaccttgaatatt |
150 |
Q |
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| T |
11858909 |
tgagtgagttgcaccaattcttttggtaaagaaccttgaatatt |
11858952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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