View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5435-Insertion-2 (Length: 1096)
Name: NF5435-Insertion-2
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5435-Insertion-2 |
 | |
|
| [»] scaffold0008 (5 HSPs) |
| | |
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| [»] scaffold0251 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0008 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 530 - 1010
Target Start/End: Original strand, 262208 - 262704
Alignment:
| Q |
530 |
ctataattacctgcagactttggtagttggcgccaattccagcaaccatatctagtaacataagcaattaatttcctatcttcttcagcagtccatgttc |
629 |
Q |
| |
|
||||| ||||||||| |||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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|
| T |
262208 |
ctatatttacctgcaaacttgggaagttggcgccaattccagaaaccatatctagtaacataagcaattaatttcctatcttcttcagcagtccaagtcc |
262307 |
T |
|
| Q |
630 |
ctttcctcattccactaattttgtcacaagaaggagttctagccatcttagcaataagtttt-gtgaaataagtgaactcaaattcagtgagagagtgag |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || ||| |||||||||||||||||||||||||||||| |
|
|
| T |
262308 |
ctttcctcattccactaattttgtcacaagaaggagttctagccatttgagcaataagtttttgttaaacaagtgaactcaaattcagtgagagagtgag |
262407 |
T |
|
| Q |
729 |
tgtgttttgtttctacaaattgtgagttatattggtcctgctgataatgataacctagtttgtgttagagcggttgttatatttatactaaagaatttca |
828 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
262408 |
tgtgttttgtttctacaaattgtgagttatattggtcctgctgataatgataacctagtttgtgttacagcggttgttatatttatactacagaatttca |
262507 |
T |
|
| Q |
829 |
tgtccaataaaataatataagtataatga----------ttatgactcttactaaaagctagtcaaatttcgtgttatttgttcacatgctatttactaa |
918 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
262508 |
tgtccaatataataatataagtataatgataagggctctttatgactcttactaaaagctagtcaaatttcgtgttatttgttcacatgctatttactaa |
262607 |
T |
|
| Q |
919 |
tcttccaggaaggtaacaggaaacatttgccacgctttcttttagctttgt-aattagcacgtgag--caatctacaa--tgaaacacaacacaaat |
1010 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
262608 |
tcttccaggaaggtaacaggaaacatttgccacgcttcattttagctttgtaaattagcacgtgaggcaaatctacaaatggaaacacaacacaaat |
262704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Original strand, 261718 - 262106
Alignment:
| Q |
7 |
agagaattcactagatgatgaaaatggggataatggaccattggtgtctgagatttgggagttagctggaggggtaatttggtaattcgatatatctctc |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
261718 |
agagatttcactagatgatgaaaatggggataaagggccattgttgtttgagatttgggaactatctggaggggtaatttggtaattcgatatatctctc |
261817 |
T |
|
| Q |
107 |
ccttgtgtggattcaattatgtcttttgatttggtggatttagtttcttcatttgtgactatgttatttatagctctcttcttgagggaagtgtgccagt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
261818 |
ccttgtgtggattcaattatgtcttttgatttggtggatttagtttcttcatttgtgacaatgttatctatagctctcttcttgagggaagtgtgccagt |
261917 |
T |
|
| Q |
207 |
ggttcttcacttcattatctgttcttccaggtaactcggccgcgatggttgaccatctattgccaagctttttatgcattctgataatcaactcctcttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
261918 |
ggttcttcacttcattatctgttcttccaggtaactcggcagcaatggttgaccatttattcccaagctttttatgcattctgataatcaactcctcttc |
262017 |
T |
|
| Q |
307 |
atctttagtaaagttccctcttttgatattaggccttagataattcagccacctcaatctacaactcttcccacaccttgtaagacctg |
395 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
262018 |
atctttagtaaagttccctcttctgatattaggccttagataattcagccacctcaatctacaactcttcccacaccttgaaagacctg |
262106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 140 - 765
Target Start/End: Original strand, 236971 - 237590
Alignment:
| Q |
140 |
gtggatttagtttcttcatttgtgactatgttatttatagctctcttcttgagggaagtgtgccagtggttcttcacttcattatctgttcttccaggta |
239 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
236971 |
gtggatttggtttcttcatttgtgacaatgttatctatagctctcttcttgagggaagtgtgccagtggttcttcacttcattatctgttcttccaggta |
237070 |
T |
|
| Q |
240 |
actcggccgcgatggttgaccatctattgccaagctttttatgcattctgataatcaactcctcttcatctttagtaaagttccctcttttgatattagg |
339 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||||| |
|
|
| T |
237071 |
actcggccgcaatggttgaccatctattgccaagctttttatgcattcggataatcaactcctcttcttcttgagtgaagtttcctcttttgatattagg |
237170 |
T |
|
| Q |
340 |
ccttagataattcagccacctcaatctacaactcttcccacaccttgtaagacctg-nnnnnnnnnnnnnnnnnnnncaatgaaattatgagtaaatttt |
438 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
237171 |
tcttaaataattcagccacctcaatctacaactcttcccacaccttgaaagacctgaaaaaatgaaaaaaaaaaaaacaatgaaattatgagtaaatttt |
237270 |
T |
|
| Q |
439 |
atcaagggatcattatccatgcattgcaaacatagttctannnnnnnnnnnnnnnnnnnnnnnaaaactcggtatctgatccaagaatcaactataatta |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||| ||| |
|
|
| T |
237271 |
atcaagggatcattatccatgcattgcaaacatagttctatattcatttttattttttattttaaaactcgctattcgatccaagaatcgactatattta |
237370 |
T |
|
| Q |
539 |
cctgcagactttggtagttggcgccaattccagcaaccatatctagtaacataagcaattaatttcctatcttcttcagcagtccatgttcctttcctca |
638 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
237371 |
cctgcaaactttggtagttggcgccaattccagcaaccgtatctggtgacataagcaattaatttcctatcttcttcagcagtccatgttcctttcctca |
237470 |
T |
|
| Q |
639 |
ttccactaattttgtcacaagaaggagttctagccatcttagcaataagttttgtgaaataagtgaactcaaattcagtgagagagtgagtgtgttttgt |
738 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||| | || ||||| |||| ||||||||||||| ||| | ||||||||||| ||||| |
|
|
| T |
237471 |
ttccactttttttgtcacaagaaggagttcttgccatctta--attattttttgagaaacaagtgaactcaaactcaat----gagtgagtgtg-tttgt |
237563 |
T |
|
| Q |
739 |
ttctacaaattgtgagttatattggtc |
765 |
Q |
| |
|
||||||| || |||||||||||||| |
|
|
| T |
237564 |
ctctacaagatgagagttatattggtc |
237590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 236869 - 236977
Alignment:
| Q |
11 |
aattcactagatgatgaaaatggggataatggaccattggtgtctgagatttgggagttagctggaggggtaatttggtaattcgatatatctctccctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||| |
|
|
| T |
236869 |
aattcactagatgatgaaaatggggataaagggccattggtgtctgagatttgggagttagctggaagggtaatttggtaattggatacacatctccctt |
236968 |
T |
|
| Q |
111 |
gtgtggatt |
119 |
Q |
| |
|
||||||||| |
|
|
| T |
236969 |
gtgtggatt |
236977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 913 - 983
Target Start/End: Original strand, 237829 - 237900
Alignment:
| Q |
913 |
tactaatcttccaggaaggtaacaggaaacatttgccacgctttcttttagctttgtaa-ttagcacgtgag |
983 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
237829 |
tacttatcttccaggaagctaacaggaaacatttgccacgcttccttttagctttgtaatttagcacgtgag |
237900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 160; Significance: 1e-84; HSPs: 2)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 184 - 395
Target Start/End: Complemental strand, 10070 - 9859
Alignment:
| Q |
184 |
cttcttgagggaagtgtgccagtggttcttcacttcattatctgttcttccaggtaactcggccgcgatggttgaccatctattgccaagctttttatgc |
283 |
Q |
| |
|
|||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
10070 |
cttctttagggaagtatgccaatagttcttcacttcattatctgttcttccaggtaactcggccgcaatggttgaccatctattcccaagatttttatgc |
9971 |
T |
|
| Q |
284 |
attctgataatcaactcctcttcatctttagtaaagttccctcttttgatattaggccttagataattcagccacctcaatctacaactcttcccacacc |
383 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9970 |
attctgataatcaactcctcttcttcttgagtaaagtttcctcttttgatattaggccttagataattcaaccacctcaatctacaactcttcccacacc |
9871 |
T |
|
| Q |
384 |
ttgtaagacctg |
395 |
Q |
| |
|
| | |||||||| |
|
|
| T |
9870 |
tcgaaagacctg |
9859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 533 - 726
Target Start/End: Complemental strand, 9467 - 9276
Alignment:
| Q |
533 |
taattacctgcagactttggtagttggcgccaattccagcaaccatatctagtaacataagcaattaatttcctatcttcttcagcagtccatgttcctt |
632 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9467 |
taattacctgcaaacttgggaagttggcgccaattccagcaaccatatctagtgacataagcaattaatttcctatcttcttcagcagtccatgtccctt |
9368 |
T |
|
| Q |
633 |
tcctcattccactaattttgtcacaagaaggagttctagccatcttagcaataagttttgtgaaataagtgaactcaaattcagtgagagagtg |
726 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||| ||||||||| | || ||||| |||| ||||||||||||||||| |||| ||||| |
|
|
| T |
9367 |
ttctcattccactttttttgtcacaagaaggagttcttgccatctta--attattttttgagaaacaagtgaactcaaattcaatgagtgagtg |
9276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 315 - 395
Target Start/End: Complemental strand, 37807953 - 37807873
Alignment:
| Q |
315 |
taaagttccctcttttgatattaggccttagataattcagccacctcaatctacaactcttcccacaccttgtaagacctg |
395 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||| |||||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
37807953 |
taaagctccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacctttcaagacctg |
37807873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 45008636 - 45008570
Alignment:
| Q |
103 |
tctcccttgtgtggattcaattatgtcttttgatttggtggatttagtttcttcatttgtgactatg |
169 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
45008636 |
tctcccttgtgtgaattcaattatgtcctttgatttggtggatttcatttcttggtttgtgactatg |
45008570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 37789289 - 37789221
Alignment:
| Q |
317 |
aagttccctcttttgatattaggccttagataattcagccacctcaatctacaactcttcccacacctt |
385 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||| |||||| | |||||||||||| ||||||||| |
|
|
| T |
37789289 |
aagttccctcttttgacatctggccttagatagttcatccaccttagtctacaactcttaccacacctt |
37789221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 37788801 - 37788755
Alignment:
| Q |
551 |
ggtagttggcgccaattccagcaaccatatctagtaacataagcaat |
597 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
37788801 |
ggtagttgtcgccaattccaacagccatacctagtaacataagcaat |
37788755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 2685211 - 2685145
Alignment:
| Q |
103 |
tctcccttgtgtggattcaattatgtcttttgatttggtggatttagtttcttcatttgtgactatg |
169 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
2685211 |
tctcccttgtgtgaattcaattatgtcctttgatttggtggatttcatttcttggtttgtgactatg |
2685145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 5478101 - 5478167
Alignment:
| Q |
103 |
tctcccttgtgtggattcaattatgtcttttgatttggtggatttagtttcttcatttgtgactatg |
169 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
5478101 |
tctcccttgtgtgaattcaattatgtcctttgatttggtggatttcatttcttggtttgtgactatg |
5478167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 45676088 - 45676135
Alignment:
| Q |
337 |
aggccttagataattcagccacctcaatctacaactcttcccacacct |
384 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
45676088 |
aggccttagataatttatccatctcaatctacaactcttcccacacct |
45676135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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