View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5435-Insertion-4 (Length: 941)

Name: NF5435-Insertion-4
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5435-Insertion-4
NF5435-Insertion-4
[»] chr5 (12 HSPs)
chr5 (7-299)||(5181397-5181689)
chr5 (376-526)||(5181148-5181298)
chr5 (787-842)||(3859759-3859814)
chr5 (787-839)||(15839309-15839361)
chr5 (787-839)||(40728279-40728331)
chr5 (787-833)||(3370128-3370174)
chr5 (790-840)||(25642732-25642782)
chr5 (787-839)||(7122512-7122564)
chr5 (787-889)||(3371280-3371384)
chr5 (787-839)||(7121320-7121371)
chr5 (788-839)||(31175238-31175289)
chr5 (788-834)||(293067-293112)
[»] chr3 (15 HSPs)
chr3 (544-788)||(4272422-4272662)
chr3 (788-839)||(24170599-24170650)
chr3 (787-878)||(28039946-28040036)
chr3 (787-841)||(21959888-21959942)
chr3 (787-883)||(5118762-5118858)
chr3 (787-839)||(24171793-24171845)
chr3 (787-883)||(26167185-26167280)
chr3 (787-879)||(18320916-18321010)
chr3 (787-842)||(38601337-38601392)
chr3 (787-842)||(49116837-49116891)
chr3 (787-842)||(23494350-23494404)
chr3 (787-842)||(26165877-26165931)
chr3 (787-842)||(39273664-39273719)
chr3 (787-883)||(5117364-5117460)
chr3 (788-842)||(23495744-23495797)
[»] chr1 (25 HSPs)
chr1 (787-878)||(20159222-20159313)
chr1 (787-839)||(27902953-27903005)
chr1 (787-842)||(17865679-17865734)
chr1 (787-839)||(20160425-20160477)
chr1 (787-839)||(27362155-27362207)
chr1 (787-839)||(49763707-49763759)
chr1 (787-838)||(7378444-7378495)
chr1 (787-833)||(21813848-21813894)
chr1 (787-840)||(6668311-6668364)
chr1 (787-875)||(22059760-22059847)
chr1 (571-740)||(43405471-43405640)
chr1 (787-839)||(16829854-16829906)
chr1 (787-839)||(16831059-16831111)
chr1 (787-839)||(21796115-21796167)
chr1 (786-842)||(27904280-27904336)
chr1 (787-839)||(46624604-46624656)
chr1 (787-839)||(46625797-46625849)
chr1 (787-838)||(17864837-17864888)
chr1 (787-842)||(48643342-48643396)
chr1 (787-839)||(27361384-27361436)
chr1 (787-838)||(22058697-22058747)
chr1 (787-834)||(38132676-38132722)
chr1 (787-842)||(38174065-38174119)
chr1 (787-838)||(49762585-49762635)
chr1 (787-842)||(50961356-50961410)
[»] chr8 (14 HSPs)
chr8 (787-842)||(20165864-20165919)
chr8 (787-879)||(20164624-20164717)
chr8 (538-788)||(26153620-26153870)
chr8 (787-883)||(9555844-9555939)
chr8 (787-839)||(38983286-38983338)
chr8 (787-839)||(39014383-39014435)
chr8 (787-839)||(44057141-44057193)
chr8 (787-839)||(38982110-38982162)
chr8 (787-839)||(39013207-39013259)
chr8 (787-842)||(43323790-43323844)
chr8 (787-839)||(4081876-4081929)
chr8 (787-839)||(4086025-4086078)
chr8 (787-839)||(26169198-26169250)
chr8 (787-842)||(37483389-37483443)
[»] chr7 (26 HSPs)
chr7 (787-842)||(15992329-15992384)
chr7 (787-842)||(44378704-44378759)
chr7 (787-842)||(44387571-44387626)
chr7 (787-839)||(44377462-44377514)
chr7 (787-839)||(44386329-44386381)
chr7 (787-842)||(39050643-39050698)
chr7 (787-839)||(27251125-27251177)
chr7 (787-842)||(11651340-11651394)
chr7 (785-842)||(28395003-28395059)
chr7 (787-842)||(15993773-15993827)
chr7 (787-842)||(32040953-32041007)
chr7 (788-842)||(34459195-34459249)
chr7 (789-839)||(39049940-39049990)
chr7 (794-839)||(11847107-11847152)
chr7 (787-875)||(21520444-21520531)
chr7 (787-879)||(30917381-30917472)
chr7 (789-842)||(35357455-35357507)
chr7 (791-839)||(27249972-27250020)
chr7 (787-839)||(34461147-34461199)
chr7 (787-842)||(26906481-26906536)
chr7 (787-838)||(28240667-28240717)
chr7 (787-842)||(48989279-48989333)
chr7 (787-833)||(7468064-7468109)
chr7 (787-833)||(29675657-29675703)
chr7 (800-842)||(36709212-36709254)
chr7 (787-836)||(37747432-37747480)
[»] chr4 (25 HSPs)
chr4 (788-839)||(21021233-21021284)
chr4 (787-842)||(46079141-46079195)
chr4 (787-839)||(4499793-4499845)
chr4 (787-835)||(21077134-21077182)
chr4 (787-839)||(30607198-30607250)
chr4 (787-839)||(34423225-34423277)
chr4 (787-839)||(48181824-48181876)
chr4 (787-833)||(4493691-4493737)
chr4 (787-894)||(10670329-10670435)
chr4 (787-894)||(10883968-10884074)
chr4 (787-839)||(21020033-21020085)
chr4 (787-839)||(25439130-25439182)
chr4 (787-839)||(30606025-30606077)
chr4 (787-839)||(34422052-34422104)
chr4 (791-839)||(40315387-40315435)
chr4 (791-839)||(40325462-40325510)
chr4 (787-842)||(53552296-53552352)
chr4 (788-839)||(468216-468267)
chr4 (787-838)||(48508289-48508340)
chr4 (787-833)||(25437930-25437976)
chr4 (787-839)||(48183190-48183241)
chr4 (787-842)||(21075157-21075211)
chr4 (787-842)||(33269517-33269571)
chr4 (791-840)||(23020155-23020203)
chr4 (787-832)||(42250138-42250182)
[»] chr6 (13 HSPs)
chr6 (787-839)||(28189256-28189308)
chr6 (787-842)||(19634502-19634557)
chr6 (787-839)||(2403674-2403726)
chr6 (787-839)||(24672559-24672611)
chr6 (787-839)||(28188112-28188164)
chr6 (787-839)||(20400141-20400193)
chr6 (787-839)||(34491151-34491203)
chr6 (787-842)||(34492419-34492473)
chr6 (806-842)||(17139784-17139820)
chr6 (787-839)||(17184568-17184620)
chr6 (787-838)||(18325541-18325591)
chr6 (701-788)||(21591924-21592011)
chr6 (787-838)||(28562775-28562826)
[»] chr2 (4 HSPs)
chr2 (787-842)||(5202729-5202784)
chr2 (787-840)||(18695346-18695400)
chr2 (791-839)||(15248393-15248441)
chr2 (788-842)||(25979588-25979640)
[»] scaffold0012 (1 HSPs)
scaffold0012 (789-842)||(54509-54562)
[»] scaffold0300 (1 HSPs)
scaffold0300 (787-839)||(15736-15788)
[»] scaffold0013 (1 HSPs)
scaffold0013 (787-839)||(100914-100966)
[»] scaffold0265 (1 HSPs)
scaffold0265 (787-833)||(18915-18961)
[»] scaffold0478 (1 HSPs)
scaffold0478 (623-788)||(11632-11797)
[»] scaffold0230 (1 HSPs)
scaffold0230 (787-838)||(18764-18814)
[»] scaffold0087 (1 HSPs)
scaffold0087 (788-838)||(42090-42139)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 5181689 - 5181397
Alignment:
Q  7 acaatacacattgaaattgattgtcatgtgattcgagacaaaattcaagttggtgtcctccactttccaattgcttccaagtatcgattagcaaacatat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5181689 acaatacacattgaaattgattgtcatgtgattcgagacaaaattcaagctggtgtcctccactttccaattgcttccaagtatcgattagcagacatat 5181590  T
Q  107 tgatcaaactcctccgtccttgcctttttataacattgcattccaagtttgaaatgattgataatcattccacctctagaggggattttgaagcatagaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  5181589 tgatcaaactcctccgtccttgcctttttataacattgcattccaagtttgaaatgattgatattcattccacctctagaggggattttgaaggatagaa 5181490  T
Q  207 atcacttctttgtatgtaattgactaatgacatttgtaactaggagcttttcttttaggaccagaactttttcattcataaaaccagctatcc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5181489 atcacttctttgtatgtaattgactaatgacatttgtaactaggagcttttcttttaggaccagaactttttcattcataaaacaagctatcc 5181397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 376 - 526
Target Start/End: Complemental strand, 5181298 - 5181148
Alignment:
Q  376 ctcactaggtttgggattcaaacttcaaagaatgcttatgagaataatgagatttgaaatgtgtaccgaaatatgattaccaactttcattgcttaatct 475  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  5181298 ctcactaggtttgggattcaaacttcaaagaatgcttatcagaataatgagatttgaaatgtgtaacgaaatatgactaccaactttcattgcttaatct 5181199  T
Q  476 taataattgtttagacattaaatttatgcattgattaattaaactatttat 526  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5181198 taataattgtttagacattagatttatgcattgattaattaaactatttat 5181148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 3859759 - 3859814
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  3859759 gggttaatatgtgtttacccccctgtaatttgggcgagttccggtttaccccctgt 3859814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 15839361 - 15839309
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  15839361 gggttaatatgtatttacccccctttaatttaggcgagttccggtttaccccc 15839309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 40728331 - 40728279
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  40728331 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 40728279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 787 - 833
Target Start/End: Original strand, 3370128 - 3370174
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttt 833  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  3370128 gggttaatatgtctttacccccctgtaatttgggcgagttccggttt 3370174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 840
Target Start/End: Complemental strand, 25642782 - 25642732
Alignment:
Q  790 ttaatatgtttttacccccctctaatttgggcgagttccggtttaccccct 840  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  25642782 ttaatatgtctttacccccctgtaatttgggcgagttccggtttatcccct 25642732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 7122564 - 7122512
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||| |||||    
T  7122564 gggttaatatgtctttacctccctgtaatttgggcgagttccggttttccccc 7122512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 787 - 889
Target Start/End: Complemental strand, 3371384 - 3371280
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccgg-tttaccccctgt-nnnnnnnnngtttagattccaaccctataatataaa-attct 883  Q
    |||||||||||| ||||||||| | ||||||||||||||||||| ||| ||||||||          ||||||||||||||||||||||||||| |||||    
T  3371384 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttcccccctgtaaaaaaaaaagtttagattccaaccctataatataaagattct 3371286  T
Q  884 cacaaa 889  Q
    ||||||    
T  3371285 cacaaa 3371280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 7121320 - 7121371
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||| |||||    
T  7121320 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttccccc 7121371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 839
Target Start/End: Complemental strand, 31175289 - 31175238
Alignment:
Q  788 ggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    ||||||||||| |||| |||||| |||||||| |||||||| ||||||||||    
T  31175289 ggttaatatgtctttaaccccctgtaatttggccgagttccagtttaccccc 31175238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 788 - 834
Target Start/End: Original strand, 293067 - 293112
Alignment:
Q  788 ggttaatatgtttttacccccctctaatttgggcgagttccggttta 834  Q
    |||||||||||||||||||| ||||||||| |||||||||| |||||    
T  293067 ggttaatatgtttttacccc-ctctaatttaggcgagttccagttta 293112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 544 - 788
Target Start/End: Original strand, 4272422 - 4272662
Alignment:
Q  544 tggtctagtgatttcacaccacaggcacaaactcagactcatgcacaaatttgggtgcgccttttgcattttccccaagagtattggcgaaagaaaactt 643  Q
    |||||| |||||||||| ||||||||||||  ||||||    ||||| |||||||| ||||| || ||||| || ||||| |||||||| ||||| |||     
T  4272422 tggtcttgtgatttcactccacaggcacaagttcagac----gcacatatttgggtacgcctattacatttacctcaagaatattggcgtaagaagactc 4272517  T
Q  644 taatggaaattgcatctggattaggcacaccattgatcattgatgacacgactttgaataggcgtttcggcctctttgctagagtgttggtggatgtcga 743  Q
    | |||||| | |  ||||| |||||||| || ||||||||||||||| | ||| |||||||||| || | ||| | ||||| ||||||||||||||||||    
T  4272518 ttatggaagtagtgtctggcttaggcactcctttgatcattgatgacgctactatgaataggcggtttgacctttatgctaaagtgttggtggatgtcga 4272617  T
Q  744 tttatccgagcaactgtttgaatccgttattgtggaaagagaggg 788  Q
      |||||||||||  |||||| || |||||||||||||| |||||    
T  4272618 cctatccgagcaatggtttgattcggttattgtggaaagggaggg 4272662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 788 - 839
Target Start/End: Original strand, 24170599 - 24170650
Alignment:
Q  788 ggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24170599 ggttaatatgtttttacccccctgtaatttgggcgagttccggtttaccccc 24170650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 787 - 878
Target Start/End: Complemental strand, 28040036 - 28039946
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatataaa 878  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||    
T  28040036 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttccccctgtaaaaaaaaagtttagattccaaccctataatataaa 28039946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 787 - 841
Target Start/End: Original strand, 21959888 - 21959942
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctg 841  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||    
T  21959888 gggttaatatgtttttacccccctgtaatttgagcgagttccggttttccccctg 21959942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 787 - 883
Target Start/End: Complemental strand, 5118858 - 5118762
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatataaaattct 883  Q
    |||||||||||||||||||| ||| |||||| || |||||||||||||||||||||         ||||||||||||||||| |||| ||| |||||    
T  5118858 gggttaatatgtttttaccctcctgtaatttaggtgagttccggtttaccccctgtaaaaaaaaagtttagattccaaccctgtaatttaagattct 5118762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 24171845 - 24171793
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  24171845 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttccccc 24171793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 787 - 883
Target Start/End: Complemental strand, 26167280 - 26167185
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatataaaattct 883  Q
    |||||||||||| ||||||||| | |||||| ||||| ||||||||||||||||||         ||||||||||||||||| ||| ||||||||||    
T  26167280 gggttaatatgtctttaccccc-tgtaatttaggcgaattccggtttaccccctgtaaaaaaaaagtttagattccaaccctgtaaaataaaattct 26167185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 879
Target Start/End: Complemental strand, 18321010 - 18320916
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttt-accccctgt-nnnnnnnnngtttagattccaaccctataatataaaa 879  Q
    |||||||||||| ||||| |||||  ||||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||||    
T  18321010 gggttaatatgtctttactcccctgcaatttgggcgagttccggtttaaccccctgtaaaaataaaagtttagattccaaccctataatataaaa 18320916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 38601337 - 38601392
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||    
T  38601337 gggttaatatgtctttacacccctataatttcgacgagttccggtttaccccctgt 38601392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 49116891 - 49116837
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||    
T  49116891 gggttaatatgtctttaccccc-tgtaatttgagcgagttccggtttaccccctgt 49116837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 23494350 - 23494404
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | ||||||||||||||| ||||||||| |||||    
T  23494350 gggttaatatgtctttaccccc-tgtaatttgggcgagtttcggtttacctcctgt 23494404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 26165877 - 26165931
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||||||||||||||| |||||| |||||    
T  26165877 gggttaatatgtctttaccccc-tataatttgggcgagttccgatttacctcctgt 26165931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 39273664 - 39273719
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||||||||  ||||| |||||||||||| |||| ||||||| |||||    
T  39273664 gggttaatatgtttttagtcccctgtaatttgggcgaattccagtttacctcctgt 39273719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 787 - 883
Target Start/End: Original strand, 5117364 - 5117460
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc-tgtnnnnnnnnngtttagattccaaccctataatataaaattct 883  Q
    |||||||||||| ||||||||| | ||||||||| ||||||| |||||||||| |||         ||||||||||||||||| |||| |||||||||    
T  5117364 gggttaatatgtctttaccccc-tgtaatttgggtgagttccagtttacccccttgtaaaaaaaaagtttagattccaaccctgtaatttaaaattct 5117460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 788 - 842
Target Start/End: Complemental strand, 23495797 - 23495744
Alignment:
Q  788 ggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    ||||||||||| ||||||||| | |||||| |||||||| |||||||||||||||    
T  23495797 ggttaatatgtatttaccccc-tgtaatttaggcgagtttcggtttaccccctgt 23495744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 787 - 878
Target Start/End: Original strand, 20159222 - 20159313
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatataaa 878  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||    
T  20159222 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccctgtaaaaaaaaagtttagattccaaccctataatataaa 20159313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 27902953 - 27903005
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  27902953 gggttaatatgtctttacccccctttaatttgggcgagttccggtttaccccc 27903005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 17865734 - 17865679
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  17865734 gggttaatatgtatttactcccctgtaatttgggcgagttccggtttaccccctgt 17865679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 20160477 - 20160425
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  20160477 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 20160425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 27362207 - 27362155
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  27362207 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 27362155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 49763759 - 49763707
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  49763759 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 49763707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 787 - 838
Target Start/End: Complemental strand, 7378495 - 7378444
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    |||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  7378495 gggttaatatgtatttacccccctctaatttggacgagttctggtttacccc 7378444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 787 - 833
Target Start/End: Complemental strand, 21813894 - 21813848
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttt 833  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  21813894 gggttaatatgtctttacccccctgtaatttgggcgagttccggttt 21813848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 787 - 840
Target Start/End: Complemental strand, 6668364 - 6668311
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccct 840  Q
    |||||||||||| |||| || ||| |||||||||||||||||||||||||||||    
T  6668364 gggttaatatgtctttagccacctgtaatttgggcgagttccggtttaccccct 6668311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 787 - 875
Target Start/End: Complemental strand, 22059847 - 22059760
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatat 875  Q
    |||||||||||| ||||||||| | ||||||||| |||||||| ||||||||||||         ||||||||||||||||||||||||    
T  22059847 gggttaatatgtctttaccccc-tgtaatttgggtgagttccgatttaccccctgtaaaaaaaaagtttagattccaaccctataatat 22059760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 571 - 740
Target Start/End: Complemental strand, 43405640 - 43405471
Alignment:
Q  571 caaactcagactcatgcacaaatttgggtgcgccttttgcattttccccaagagtattggcgaaagaaaactttaatggaaattgcatctggattaggca 670  Q
    ||||||||||| |||||||| ||||||||||| ||  ||||  | || |||||||||||||| || |  ||  |  | |||||||||||    |||||||    
T  43405640 caaactcagacacatgcacagatttgggtgcggctcatgcacctacctcaagagtattggcgcaaaacgaccctttttgaaattgcatccaatttaggca 43405541  T
Q  671 caccattgatcattgatgacacgactttgaataggcgtttcggcctctttgctagagtgttggtggatgt 740  Q
    |||| ||||| ||||| ||  | |||||||||||||| || |||||||| ||| |||| |||||||||||    
T  43405540 cacctttgataattgacgatgctactttgaataggcgctttggcctcttcgctcgagttttggtggatgt 43405471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 16829854 - 16829906
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||| |||||    
T  16829854 gggttaatatgtctttacctccctgtaatttgggcgagttccggttttccccc 16829906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 16831111 - 16831059
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||| |||||    
T  16831111 gggttaatatgtctttacccccttgtaatttgggcgagttccggttttccccc 16831059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 21796115 - 21796167
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||| ||| |||||||||||| |||||||||||||||    
T  21796115 gggttaatatgtctttaccctcctgtaatttgggcgaattccggtttaccccc 21796167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 842
Target Start/End: Complemental strand, 27904336 - 27904280
Alignment:
Q  786 ggggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    ||||||||||||| ||||||||||| |||||| || |||||||| ||||||||||||    
T  27904336 ggggttaatatgtatttacccccctgtaatttaggtgagttccgatttaccccctgt 27904280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 46624604 - 46624656
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  46624604 gggttaatatgtctttacccccctgtaatttgggcgagtttcggttttccccc 46624656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 46625849 - 46625797
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||| |||||    
T  46625849 gggttaatatgtctttacccccctgtaatttgggcgagttccgattttccccc 46625797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 838
Target Start/End: Original strand, 17864837 - 17864888
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    |||||||||||| ||||| ||||| |||||||||||||||| ||||||||||    
T  17864837 gggttaatatgtctttacacccctgtaatttgggcgagttctggtttacccc 17864888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 48643396 - 48643342
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||    
T  48643396 gggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttaccccctgt 48643342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 27361384 - 27361436
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||| ||||| |||||||||||||||||| ||| |||||    
T  27361384 gggttaatatgtctttactcccctgtaatttgggcgagttccgattttccccc 27361436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 838
Target Start/End: Original strand, 22058697 - 22058747
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    |||||||||||| ||||||||| | ||||||||||||||| |||||||||||    
T  22058697 gggttaatatgtctttaccccc-tgtaatttgggcgagtttcggtttacccc 22058747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 834
Target Start/End: Complemental strand, 38132722 - 38132676
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttta 834  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||||    
T  38132722 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggttta 38132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 38174065 - 38174119
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| |||||| || | ||| |||||||||||||||||||||||||||    
T  38174065 gggttaatatgtctttacctcc-tgtaacttgggcgagttccggtttaccccctgt 38174119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 838
Target Start/End: Original strand, 49762585 - 49762635
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||| ||||    
T  49762585 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttcccc 49762635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 50961356 - 50961410
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||| || |||||||||||||||||||||    
T  50961356 gggttaatatgtatttaccccc-tgtaatttaggggagttccggtttaccccctgt 50961410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 20165919 - 20165864
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  20165919 gggttaatatgtatttacccccctctaatttgggcgagttccggttttccccctgt 20165864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 787 - 879
Target Start/End: Original strand, 20164624 - 20164717
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttta-ccccctgtnnnnnnnnngtttagattccaaccctataatataaaa 879  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||         ||||||||| ||||||||||||||||||    
T  20164624 gggttaatatgtctttacccccctgtaatttgggcgagttccggtttacccccctgtaaaaaaaaagtttagatttcaaccctataatataaaa 20164717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 538 - 788
Target Start/End: Original strand, 26153620 - 26153870
Alignment:
Q  538 tattgttggtctagtgatttcacaccacaggcacaaactcagactcatgcacaaatttgggtgcgccttttgcattttccccaagagtattggcgaaaga 637  Q
    ||||||||||||||||||||  |  ||||||||||  |||| || || || ||||| |||||  |  | || || || ||||| ||||||||||| |||     
T  26153620 tattgttggtctagtgatttttctacacaggcacaggctcaaacacacgcccaaatatgggtctgtttcttacacttgccccatgagtattggcgtaagc 26153719  T
Q  638 aaactttaatggaaattgcatctggattaggcacaccattgatcattgatgacacgactttgaataggcgtttcggcctctttgctagagtgttggtgga 737  Q
    | |||||| ||||||| ||||| ||| | |||||||| ||||| ||||||||  | |||||  | ||||| || ||  | | |||| |||| ||| | ||    
T  26153720 agactttattggaaatagcatccggactcggcacacctttgataattgatgatgcaactttacacaggcgattagggatatatgctcgagttttgattga 26153819  T
Q  738 tgtcgatttatccgagcaactgtttgaatccgttattgtggaaagagaggg 788  Q
    ||| ||| | |||||  ||||||||||||||||||||||||||||||||||    
T  26153820 tgttgatctctccgaaaaactgtttgaatccgttattgtggaaagagaggg 26153870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 787 - 883
Target Start/End: Original strand, 9555844 - 9555939
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatataaaattct 883  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||| ||||||||         ||||||||||||||||| ||| ||||||||||    
T  9555844 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttccccctgtaaaaaaaaagtttagattccaaccctgtaaaataaaattct 9555939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 38983338 - 38983286
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  38983338 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 38983286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 39014435 - 39014383
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  39014435 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 39014383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 44057141 - 44057193
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  44057141 gggttaatatgtatttacccccctgtaatttgggcgagttccggttttccccc 44057193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 38982110 - 38982162
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  38982110 gggttaatatgtctttacccccctgtaatttgggcgagtttcggttttccccc 38982162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 39013207 - 39013259
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  39013207 gggttaatatgtctttacccccctgtaatttgggcgagtttcggttttccccc 39013259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 43323790 - 43323844
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||    
T  43323790 gggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttaccccctgt 43323844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 4081929 - 4081876
Alignment:
Q  787 gggttaatatgtttttaccccc-ctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||| || |||||||||||||||||||||| |||||    
T  4081929 gggttaatatgtctttaccccctctgtaatttgggcgagttccggttttccccc 4081876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 4086078 - 4086025
Alignment:
Q  787 gggttaatatgtttttaccccc-ctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||| || |||||||||||||||||||||| |||||    
T  4086078 gggttaatatgtctttaccccctctgtaatttgggcgagttccggttttccccc 4086025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 26169198 - 26169250
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||  ||||| |||||||||||||||||||||| |||||    
T  26169198 gggttaatatgtctttattcccctgtaatttgggcgagttccggttttccccc 26169250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 37483443 - 37483389
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||||| ||||||| ||||||||||||||    
T  37483443 gggttaatatgtctttaccccc-tgtaatttggacgagttctggtttaccccctgt 37483389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 15992329 - 15992384
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  15992329 gggttaatatgtctttacccccctgtaatttgggcgagttccggtttaccccctgt 15992384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 44378759 - 44378704
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  44378759 gggttaatatgtatttacccccctctaatttgggcgagttccggttttccccctgt 44378704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 44387626 - 44387571
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  44387626 gggttaatatgtatttacccccctctaatttgggcgagttccggttttccccctgt 44387571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 44377462 - 44377514
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  44377462 gggttaatatgtctttacccccctgtaatttgggcgagttccggtttaccccc 44377514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 44386329 - 44386381
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  44386329 gggttaatatgtctttacccccctgtaatttgggcgagttccggtttaccccc 44386381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 39050698 - 39050643
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  39050698 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccctgt 39050643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 27251177 - 27251125
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  27251177 gggttaatatgtctttacccccctataatttgggcgagttccggttttccccc 27251125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 11651340 - 11651394
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  11651340 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggtttaccccctgt 11651394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 785 - 842
Target Start/End: Complemental strand, 28395059 - 28395003
Alignment:
Q  785 aggggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    ||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||    
T  28395059 aggggttaatacgtatttaccccccg-taatttgggcgagttccggtttaccccctgt 28395003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 15993827 - 15993773
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||    
T  15993827 gggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttaccccctgt 15993773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 32040953 - 32041007
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||    
T  32040953 gggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttaccccctgt 32041007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 788 - 842
Target Start/End: Original strand, 34459195 - 34459249
Alignment:
Q  788 ggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||  |||||||    
T  34459195 ggttaatatgtctttacccccctgtaatttgggcgagtttcggtttttcccctgt 34459249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 789 - 839
Target Start/End: Original strand, 39049940 - 39049990
Alignment:
Q  789 gttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||| |||||    
T  39049940 gttaatatgtctttacccccctgtaattttggcgagttccggttttccccc 39049990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 794 - 839
Target Start/End: Complemental strand, 11847152 - 11847107
Alignment:
Q  794 tatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||    
T  11847152 tatgtatttacccccctgtaatttaggcgagttccggtttaccccc 11847107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 875
Target Start/End: Original strand, 21520444 - 21520531
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatat 875  Q
    ||||||||||| |||||||||| | |||||| |||||||||||| |||||||||||         ||||||| ||||||||||||||||    
T  21520444 gggttaatatgattttaccccc-tgtaatttaggcgagttccggcttaccccctgtaaaaaaacagtttagagtccaaccctataatat 21520531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 879
Target Start/End: Complemental strand, 30917472 - 30917381
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatataaaa 879  Q
    |||||||||||||||| || |||| ||||||||||||||| || ||||||||||||         ||||||||||||||||| |||| |||||    
T  30917472 gggttaatatgttttt-cctccctgtaatttgggcgagtttcgatttaccccctgtaaaaaaaaggtttagattccaaccctgtaatttaaaa 30917381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 789 - 842
Target Start/End: Original strand, 35357455 - 35357507
Alignment:
Q  789 gttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||| ||||||||| | |||||||| ||||||||||||||||||||||    
T  35357455 gttaatatgtctttaccccc-tataatttggacgagttccggtttaccccctgt 35357507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 791 - 839
Target Start/End: Original strand, 27249972 - 27250020
Alignment:
Q  791 taatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||| |||||||| || |||||||||||||||||||||| |||||    
T  27249972 taatatgtctttaccccgctgtaatttgggcgagttccggttttccccc 27250020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 34461199 - 34461147
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||  ||| |||||||||||||||||||||| |||||    
T  34461199 gggttaatatgtctttaccttcctgtaatttgggcgagttccggttttccccc 34461147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 26906536 - 26906481
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| |||| |||||| |||||||||||||||||| ||| ||| ||||    
T  26906536 gggttaatatgtctttatccccctgtaatttgggcgagttccgattttccctctgt 26906481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 838
Target Start/End: Original strand, 28240667 - 28240717
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||| ||||    
T  28240667 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttcccc 28240717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 48989279 - 48989333
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||||||||| || |||||||||||||||    
T  48989279 gggttaatatgtctttaccccc-tgtaatttgggcgactttcggtttaccccctgt 48989333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 787 - 833
Target Start/End: Original strand, 7468064 - 7468109
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttt 833  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||    
T  7468064 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggttt 7468109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 787 - 833
Target Start/End: Complemental strand, 29675703 - 29675657
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttt 833  Q
    |||||||||||||||||||| ||| |||||||||||| ||| |||||    
T  29675703 gggttaatatgtttttaccctcctgtaatttgggcgaattctggttt 29675657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 800 - 842
Target Start/End: Original strand, 36709212 - 36709254
Alignment:
Q  800 tttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||    
T  36709212 tttacccccctgtaatttgggtgagttccgatttaccccctgt 36709254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 836
Target Start/End: Complemental strand, 37747480 - 37747432
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacc 836  Q
    |||||||||||| ||||||||| | |||||| ||||||||||||||||||    
T  37747480 gggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttacc 37747432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 788 - 839
Target Start/End: Complemental strand, 21021284 - 21021233
Alignment:
Q  788 ggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21021284 ggttaatatgtttttacccccctgtaatttgggcgagttccggtttaccccc 21021233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 46079141 - 46079195
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  46079141 gggttaatatgtttttaccccc-tgtaatttgggcgagttccggtttaccccctgt 46079195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 4499845 - 4499793
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  4499845 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 4499793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 835
Target Start/End: Complemental strand, 21077182 - 21077134
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttac 835  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  21077182 gggttaatatgtatttacccccctgtaatttgggcgagttccggtttac 21077134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 30607250 - 30607198
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  30607250 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 30607198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 34423277 - 34423225
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  34423277 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 34423225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 48181824 - 48181876
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  48181824 gggttaatatgtctttacccccctgtaatttgggcgagttccggttttccccc 48181876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 787 - 833
Target Start/End: Original strand, 4493691 - 4493737
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttt 833  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  4493691 gggttaatatgtctttacccccctgtaatttgggcgagttccggttt 4493737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 787 - 894
Target Start/End: Original strand, 10670329 - 10670435
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatataaa-attct-c 884  Q
    |||||||||||| |||||| || | ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||| ||||| |    
T  10670329 gggttaatatgtctttacctcc-tgtaatttgggcgagttccggtttaccccctg--aaaaaaaagtttagattccaaccctataatataaagattctcc 10670425  T
Q  885 acaaacaccc 894  Q
    ||||||||||    
T  10670426 acaaacaccc 10670435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 787 - 894
Target Start/End: Original strand, 10883968 - 10884074
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgtnnnnnnnnngtttagattccaaccctataatataaa-attct-c 884  Q
    |||||||||||| |||||| || | ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||| ||||| |    
T  10883968 gggttaatatgtctttacctcc-tgtaatttgggcgagttccggtttaccccctg--aaaaaaaagtttagattccaaccctataatataaagattctcc 10884064  T
Q  885 acaaacaccc 894  Q
    ||||||||||    
T  10884065 acaaacaccc 10884074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 21020033 - 21020085
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||| |||||    
T  21020033 gggttaatatgtttttacccccctgtaattagggcgagttctggttttccccc 21020085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 25439182 - 25439130
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||| |||||    
T  25439182 gggttaatatgtctttacccccttgtaatttgggcgagttccggttttccccc 25439130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 30606025 - 30606077
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  30606025 gggttaatatgtctttacccccctgtaatttgggcgagtttcggttttccccc 30606077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 34422052 - 34422104
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  34422052 gggttaatatgtctttacccccctgtaatttgggcgagtttcggttttccccc 34422104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 791 - 839
Target Start/End: Complemental strand, 40315435 - 40315387
Alignment:
Q  791 taatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  40315435 taatatgtctttacccccctgtaatttgggcgagttccggttttccccc 40315387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 791 - 839
Target Start/End: Complemental strand, 40325510 - 40325462
Alignment:
Q  791 taatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  40325510 taatatgtctttacccccctgtaatttgggcgagttccggttttccccc 40325462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 53552352 - 53552296
Alignment:
Q  787 gggttaatatgtttttaccc-ccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||  |||| |||||||||||||||||||||||||||||||    
T  53552352 gggttaatatgtctttaccttccctgtaatttgggcgagttccggtttaccccctgt 53552296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 788 - 839
Target Start/End: Original strand, 468216 - 468267
Alignment:
Q  788 ggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||| || ||||||||||| |||||| |||||||||||||||||||||    
T  468216 ggttaataggtatttacccccctgtaatttaggcgagttccggtttaccccc 468267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 838
Target Start/End: Original strand, 48508289 - 48508340
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    |||||||||||| ||||||| ||| |||||| ||||||||||||||||||||    
T  48508289 gggttaatatgtctttaccctcctataattttggcgagttccggtttacccc 48508340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 787 - 833
Target Start/End: Original strand, 25437930 - 25437976
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttt 833  Q
    |||||||||||| ||||||||||| |||||||| |||||||||||||    
T  25437930 gggttaatatgtctttacccccctgtaatttggacgagttccggttt 25437976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 48183241 - 48183190
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||| |||||    
T  48183241 gggttaatatgtctttaccccc-tgtaatttgggcgagttccggttttccccc 48183190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 21075157 - 21075211
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| ||||||||| | |||||| |||||||||||||||| |||||||    
T  21075157 gggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttatcccctgt 21075211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 33269571 - 33269517
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||| |||| |||| | |||||||| ||||||||||||||||||||||    
T  33269571 gggttaatatgtctttatcccc-tataatttggacgagttccggtttaccccctgt 33269517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 840
Target Start/End: Complemental strand, 23020203 - 23020155
Alignment:
Q  791 taatatgtttttacccccctctaatttgggcgagttccggtttaccccct 840  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||||||    
T  23020203 taatatgtctttaccccc-tgtaatttgggcgagttccggttttccccct 23020155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 832
Target Start/End: Original strand, 42250138 - 42250182
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtt 832  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||    
T  42250138 gggttaatatgtatttaccccc-tgtaatttgggcgagttccggtt 42250182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 28189308 - 28189256
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  28189308 gggttaatatgtttttacccccctgtaatttgggcgagttccagtttaccccc 28189256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 19634502 - 19634557
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||||||||    
T  19634502 gggttaatatgtttttacccccctgtaatttaggcgagtttcggtttaccccctgt 19634557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 2403674 - 2403726
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  2403674 gggttaatatgtatttacccccctgtaatttaggcgagttccggtttaccccc 2403726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 24672559 - 24672611
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  24672559 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttccccc 24672611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 28188112 - 28188164
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  28188112 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttccccc 28188164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 20400141 - 20400193
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||| | ||||||||||||||| ||||||||||||    
T  20400141 gggttaatatgtctttacccccttgtaatttgggcgagtttcggtttaccccc 20400193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 34491151 - 34491203
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||||||||||||||| |||||||||||||||  ||||| |||||    
T  34491151 gggttaatatgtttttacccccctgtaatttgggcgagttttggttttccccc 34491203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 787 - 842
Target Start/End: Complemental strand, 34492473 - 34492419
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||||||||| ||| | |||||||||||||||||| ||||||||||||    
T  34492473 gggttaatatgtttttactccc-tgtaatttgggcgagttccgatttaccccctgt 34492419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 806 - 842
Target Start/End: Original strand, 17139784 - 17139820
Alignment:
Q  806 cccctctaatttgggcgagttccggtttaccccctgt 842  Q
    ||||| |||||||||||||||||||||||||||||||    
T  17139784 cccctgtaatttgggcgagttccggtttaccccctgt 17139820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 17184620 - 17184568
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    ||||||||||||||||||||  |  ||||||||||||| ||||||||||||||    
T  17184620 gggttaatatgtttttacccttcggtaatttgggcgaggtccggtttaccccc 17184568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 838
Target Start/End: Original strand, 18325541 - 18325591
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    |||||||||||| ||||||||| | ||||||||||||||| |||||||||||    
T  18325541 gggttaatatgtctttaccccc-tgtaatttgggcgagtttcggtttacccc 18325591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 701 - 788
Target Start/End: Complemental strand, 21592011 - 21591924
Alignment:
Q  701 ataggcgtttcggcctctttgctagagtgttggtggatgtcgatttatccgagcaactgtttgaatccgttattgtggaaagagaggg 788  Q
    |||| ||||| || |||| ||||||||| ||||| ||||| ||| | || || ||||| |||||||| |||||||||||| |||||||    
T  21592011 atagacgtttagggctctatgctagagttttggttgatgttgatctctctgaacaactttttgaatctgttattgtggaacgagaggg 21591924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 838
Target Start/End: Original strand, 28562775 - 28562826
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    ||||||||||||||||| || ||| |||||||||||||||| ||||| ||||    
T  28562775 gggttaatatgtttttatccacctgtaatttgggcgagttctggtttccccc 28562826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 5202729 - 5202784
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||    
T  5202729 gggttaatatgtttttacccccttgtaatttgggcgagtttcggtttaccccctgt 5202784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 787 - 840
Target Start/End: Original strand, 18695346 - 18695400
Alignment:
Q  787 gggttaatatgtttttacccc-cctctaatttgggcgagttccggtttaccccct 840  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  18695346 gggttaatatgtctttaccccccctctaatttgggcgagttccggtttaccccct 18695400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 791 - 839
Target Start/End: Original strand, 15248393 - 15248441
Alignment:
Q  791 taatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  15248393 taatatgtctttacccccctgtaatttgggcgagttccggttttccccc 15248441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 788 - 842
Target Start/End: Original strand, 25979588 - 25979640
Alignment:
Q  788 ggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    ||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||    
T  25979588 ggttaatatgtctttaccccc-tgtaatttgggcga-ttccggtttaccccctgt 25979640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 789 - 842
Target Start/End: Complemental strand, 54562 - 54509
Alignment:
Q  789 gttaatatgtttttacccccctctaatttgggcgagttccggtttaccccctgt 842  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  54562 gttaatatgtctttacccccctgtaatttgggcgagttccggttttccccctgt 54509  T

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Target: scaffold0300 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Original strand, 15736 - 15788
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  15736 gggttaatatgtttttacccccctgtaatttgggcgagttctggttttccccc 15788  T

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Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 787 - 839
Target Start/End: Complemental strand, 100966 - 100914
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttaccccc 839  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  100966 gggttaatatgtctttacccccctgtaatttaggcgagttccggtttaccccc 100914  T

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Target: scaffold0265 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 787 - 833
Target Start/End: Original strand, 18915 - 18961
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggttt 833  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  18915 gggttaatatgtctttacccccctgtaatttgggcgagttccggttt 18961  T

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Target: scaffold0478 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 623 - 788
Target Start/End: Complemental strand, 11797 - 11632
Alignment:
Q  623 agtattggcgaaagaaaactttaatggaaattgcatctggattaggcacaccattgatcattgatgacacgactttgaataggcgtttcggcctctttgc 722  Q
    |||||||||| ||| | ||| || |||||||  |||| ||| | |||||||| ||||| |||||||| || |||||  |  ||||||| ||  | | |||    
T  11797 agtattggcgtaagcagactctattggaaataacatccggactcggcacacctttgataattgatgatacaactttataccggcgtttagggatatatgc 11698  T
Q  723 tagagtgttggtggatgtcgatttatccgagcaactgtttgaatccgttattgtggaaagagaggg 788  Q
    | |||| ||| | ||||| |||||||| || ||||||||||| ||||||||||||||| |||||||    
T  11697 tcgagtcttgattgatgttgatttatctgaacaactgtttgagtccgttattgtggaacgagaggg 11632  T

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Target: scaffold0230 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 838
Target Start/End: Complemental strand, 18814 - 18764
Alignment:
Q  787 gggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    |||||||||||| ||||||||| | ||||||||||||||| |||||||||||    
T  18814 gggttaatatgtctttaccccc-tgtaatttgggcgagtttcggtttacccc 18764  T

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Target: scaffold0087 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 788 - 838
Target Start/End: Original strand, 42090 - 42139
Alignment:
Q  788 ggttaatatgtttttacccccctctaatttgggcgagttccggtttacccc 838  Q
    ||||||||||| ||||||||| | |||||| ||||||||||||||||||||    
T  42090 ggttaatatgtatttaccccc-tgtaatttaggcgagttccggtttacccc 42139  T

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