View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5435-Insertion-5 (Length: 869)
Name: NF5435-Insertion-5
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5435-Insertion-5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0037 (2 HSPs) |
| | |
|
| [»] scaffold0604 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 726; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 8 - 869
Target Start/End: Original strand, 42295258 - 42296115
Alignment:
| Q |
8 |
gaggtttctttgaattccgattctcatgtgcggaagatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
42295258 |
gaggtttctttgaattccgattctcatgtgcggaagatcttagaagtgtctgatcgaatgacacttggaacttgaa-tccggaatcgttacgtttatctc |
42295356 |
T |
|
| Q |
108 |
gttggtcactagattttaattcctttaatcataatcaaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcaccctaaatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42295357 |
gttggtcactagattttaattcctttaatcataatcaaactcatagtcaagtatgggttcgtttccattatctccctctagagtattggcaccctaaatt |
42295456 |
T |
|
| Q |
208 |
cctttttgagattgttgaggctattggtacacctattttaattgacgaaaaatactacaaatcacttctttggtcactatgctcgtgtactagtagatat |
307 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42295457 |
cctttttgagattgctggggctattggtacacctattttaattgacgaaaa-taatacaattcacttctttggtcactatgctcgtgtactagtagatat |
42295555 |
T |
|
| Q |
308 |
caatttggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttacttttgtttc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42295556 |
caatttggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttactcttgtttc |
42295655 |
T |
|
| Q |
408 |
acttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaatgggtgcttccaagaatgatcaagttnnnn |
507 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42295656 |
acttgcaattatattggtcattctttggatcattgtaaaaaagatccttccaataaaattgctcgtgaaatgggtgcttccaaaaatgatcaagttaaaa |
42295755 |
T |
|
| Q |
508 |
nnntcaaacatgatttggtccccaaaagacaagtggatcaagtgcaagactgcaacaaagtggtggccaatgaagaccctattattttttatgtaataag |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42295756 |
aaatcaaacatgatttggtccccaaaagacaagtggatcaagtgcaagactgcaacaaagttatggccaatgaagaccctattattttttatataataag |
42295855 |
T |
|
| Q |
608 |
gtctaaggaggtagcagctactgtgttggtgggagatcctattaacctttatgaagaatctactggcatttatgttggattagtttatgtacaatcaata |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
42295856 |
gtctaaggaggtagcagctactgtgttggtgggagatcctattaacctttatgaagaatctactggcatttctgttggagtagtttatgtacaatcaata |
42295955 |
T |
|
| Q |
708 |
caggttgaaatttccattgagtagcctgagcgacaaatagagaaccagcatagcacacattatctcgatatgcacatagttggtccctggtgcaatgtcg |
807 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
42295956 |
caggttgaaattcccattgagtagcctgagcaacaaatagagaaccaacatagcacacattatcccgatatgcatatagttggtccctcgtgcaatgtcg |
42296055 |
T |
|
| Q |
808 |
tgacagacttagactatatactcaagatccccaatcttggtgtggtgggatttctttcaatg |
869 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42296056 |
tgacagacttagac--tatactcaagatccccaatcttggtgtggtgggatttctttcaatg |
42296115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 20424201 - 20424671
Alignment:
| Q |
8 |
gaggtttctttgaattccgattctcatgtgcggaagatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctc |
107 |
Q |
| |
|
||||||| || ||||||||||||||||||| || |||||||||||||| |||||||||| |||||||||||||| | | | |||||| ||||| | |
|
|
| T |
20424201 |
gaggttttttcgaattccgattctcatgtgttgatgatcttagaagtgtttggtcgaatggaacttggaacttgaagccggggct-gttacgattatccc |
20424299 |
T |
|
| Q |
108 |
gttggtcactagattttaattcctttaatcataatcaaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcaccctaaatt |
207 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || |||||||||||||| || ||| | ||||| ||||||||||||||||| |||||||| |||| | |
|
|
| T |
20424300 |
gttggtcaccggattttaattcatttaatcagaaacaaactcatagtcaggtttggttgcgttttcattatctccctctggaatattggcaacctataac |
20424399 |
T |
|
| Q |
208 |
cctttttgagattgttgaggctattggtacacctattttaattgacgaaaaatactacaaatcacttctttggtcactatgctcgtgtactagtagatat |
307 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||||||||| || | ||||| |||||| | |||||||| ||||| || | ||||||||||| |
|
|
| T |
20424400 |
tctttttgagattgcaggggctattggtacgcctattttaattgatgagag-tactagaaatcattcgtttggtcattatgcatgtattctagtagatat |
20424498 |
T |
|
| Q |
308 |
caatttggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttacttttgtttc |
407 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||| | ||| |||| ||||||| |
|
|
| T |
20424499 |
taatttggctggatttcttcctgaatctttgtgggttgaacgagaaaaatttacttttgaaattgagattgagtatgaaaatcctccatactattgtttc |
20424598 |
T |
|
| Q |
408 |
acttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaatgg |
480 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||| | ||||||| |
|
|
| T |
20424599 |
acttgcaattctattggtcattcaacggatcattgtaaaaaagatcttgccaataaaattgcttgcgaaatgg |
20424671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 10 - 477
Target Start/End: Complemental strand, 43806174 - 43805710
Alignment:
| Q |
10 |
ggtttctttgaattccgattctcatgtgcggaagatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctcgt |
109 |
Q |
| |
|
||||| |||||||| |||||||| |||| || ||||||||||| || |||||||||| ||||||||| ||||| | | | | |||||||||||| ||| |
|
|
| T |
43806174 |
ggtttttttgaatttcgattctcctgtgttgatgatcttagaagcgtctggtcgaatggcacttggaatttgaagccaggatt-gttacgtttatcacgt |
43806076 |
T |
|
| Q |
110 |
tggtcactagattttaattcctttaatcataatcaaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcaccctaaattcc |
209 |
Q |
| |
|
|||| | ||||||||| ||||| ||| ||||||||||||||||||||| || ||||| |||||| | |||||||| |||||||| || | ||| |
|
|
| T |
43806075 |
-ggtctccggattttaatccctttgttcaggctcaaactcatagtcaagtatgagtgcgttttcattattttcctctggaatattggcaagatagaatcc |
43805977 |
T |
|
| Q |
210 |
tttttgagattgttgaggctattggtacacctattttaattgacgaaaaatactacaaatcacttctttggtcactatgctcgtgtactagtagatatca |
309 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| ||||||| || || ||||| ||| ||| |||||||| ||||||||||| ||||||||||| | |
|
|
| T |
43805976 |
tttttgagattgctggtgctattggtacccctataataattgatgagaa-tactagaaacaactcatttggtcattatgctcgtgttctagtagatatta |
43805878 |
T |
|
| Q |
310 |
atttggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttacttttgtttcac |
409 |
Q |
| |
|
|||| | ||| || |||| ||| || |||| ||||||||||| | | | ||||||| |||||||||||||| ||| | | ||| ||||||||||| || |
|
|
| T |
43805877 |
attttgctggatttattccggatactctgtgtgttgaaagagataattttgcttttgacattgagattgagtatgaacatcctccatacttttgttttac |
43805778 |
T |
|
| Q |
410 |
ttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||||||||||||||| |||| | | |||||||||||| |
|
|
| T |
43805777 |
ttgtaattctattggtcattcctcggatcattgtaaaaaagatcctgccaacagagttgctcgtgaaa |
43805710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 3090737 - 3090685
Alignment:
| Q |
301 |
tagatatcaatttggttggcattcttcctgattctttgtgggttgaaagagaa |
353 |
Q |
| |
|
||||||||||||| | | ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
3090737 |
tagatatcaatttcgcttgcattattcttgattctttgtgggttgaaagagaa |
3090685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 411 - 449
Target Start/End: Complemental strand, 3090625 - 3090587
Alignment:
| Q |
411 |
tgcaattatattggtcattcttcggatcattgtaaaaaa |
449 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3090625 |
tgcaattcaattggtcattcttcggatcattgtaaaaaa |
3090587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 10 - 477
Target Start/End: Original strand, 20424090 - 20424555
Alignment:
| Q |
10 |
ggtttctttgaattccgattctcatgtgcggaagatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctcgt |
109 |
Q |
| |
|
||||| |||||||| || ||||||| || || ||||||||||||||||||||||||| | ||||||||||||| ||| | | |||||| ||||| ||| |
|
|
| T |
20424090 |
ggtttttttgaatttcgcttctcatccgctgatgatcttagaagtgtatggtcgaatggcgcttggaacttgaagcccggagt-gttacgcttatcgcgt |
20424188 |
T |
|
| Q |
110 |
tggtcactagattttaattcctttaatcataatcaaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcaccctaaattcc |
209 |
Q |
| |
|
||||| | ||||||||| ||| |||||| | |||||| ||||||| |||||||| || || |||||||| || ||||| |||||||| || | ||| |
|
|
| T |
20424189 |
tggtctccggattttaatccctctaatcagactcaaaccaatagtcaggtatgggtacgatttcattatcttccactggaatattggcaagatagaatcc |
20424288 |
T |
|
| Q |
210 |
tttttgagattgttgaggctattggtacacctattttaattgacgaaaaatactacaaatcacttc-tttggtcactatgctcgtgtactagtagatatc |
308 |
Q |
| |
|
|||||||||| | || ||| |||||||| |||||| ||||||| || || ||||| ||| || ||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
20424289 |
tttttgagatcgctggggccattggtacgcctattataattgatgagaa-tactagaaa-caattcatttggtcattatgctcgtgttctagtagatatc |
20424386 |
T |
|
| Q |
309 |
aatttggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttacttttgtttca |
408 |
Q |
| |
|
||||| | ||| || | || ||| ||||||| |||||||||| | | | ||||||| |||||||||||||| || || | ||| ||||||||||||| |
|
|
| T |
20424387 |
aattttgctggatttatcccggatactttgtgtgttgaaagagctaattttgcttttgacattgagattgagtatgataatcctccatacttttgtttca |
20424486 |
T |
|
| Q |
409 |
cttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
20424487 |
cttgtaattctattggtcattcaatggatcattgtaaaaaagatcatgccaacaaaattgctcgtgaaa |
20424555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 310 - 447
Target Start/End: Complemental strand, 29170959 - 29170822
Alignment:
| Q |
310 |
atttggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttacttttgtttcac |
409 |
Q |
| |
|
|||||| |||| |||||||||| |||||| ||||||||||||| | | | ||||||| |||||||||||||| ||| || || |||||||||||||| |
|
|
| T |
29170959 |
atttggctggctttcttcctgacactttgttggttgaaagagaaaagttttcttttgacattgagattgagtatgaacaatcgccatacttttgtttcac |
29170860 |
T |
|
| Q |
410 |
ttgcaattatattggtcattcttcggatcattgtaaaa |
447 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||| |||| |
|
|
| T |
29170859 |
ttgcaattctattggccattcttctgatcattgaaaaa |
29170822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 16 - 477
Target Start/End: Original strand, 21407696 - 21408156
Alignment:
| Q |
16 |
tttgaattccgattctcatgtgcggaagatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctcgttggtca |
115 |
Q |
| |
|
|||||||| | |||||||||||| || ||||| |||||||| |||||||||| | ||||||||||||| || ||| ||||| |||||| || ||||| |
|
|
| T |
21407696 |
tttgaatttcaattctcatgtgctgatgatctcagaagtgtctggtcgaatggcgcttggaacttgaag-ccataattgttacttttatcacgctggtcg |
21407794 |
T |
|
| Q |
116 |
ctagattttaattcctttaatcataatcaaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcaccctaaattcctttttg |
215 |
Q |
| |
|
| |||||||||| |||||| ||| | |||||||||||| || |||||||| | ||| ||||||| ||| |||| |||||||| || |||||||| |
|
|
| T |
21407795 |
ccagattttaatccctttattcagactcaaactcataggcaggtatgggtgcattttaattatcttcctatggaatattggcaagaaggat-cctttttg |
21407893 |
T |
|
| Q |
216 |
agattgttgaggctattggtacacctattttaattgacgaaaa--atactacaaatcacttctttggtcactatgctcgtgtactagtagatatcaattt |
313 |
Q |
| |
|
|||||| | |||||||||||| ||||| ||||| | || || ||| || ||| ||| |||||||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
21407894 |
agattgcaggggctattggtacccctatcataatttatgagaataata-taaaaaaaactcatttggtcattatgcttgtgttctagtagatattaattt |
21407992 |
T |
|
| Q |
314 |
ggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttacttttgtttcacttgc |
413 |
Q |
| |
|
| ||| || |||| ||| || |||| ||| ||||||| | | | |||||| |||||||||||||| ||| | | ||| |||||||| |||||||| |
|
|
| T |
21407993 |
tgctggatttattccggatactctgtgtgttcaaagagataattttgattttgacattgagattgagtatgaacatcctccatacttttggttcacttgt |
21408092 |
T |
|
| Q |
414 |
aattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| ||||| |||| | |||||||||||||| |
|
|
| T |
21408093 |
aattctattggtcattcatcggatcattgtaaaaaatatcctgccaacataattgctcgtgaaa |
21408156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 276 - 469
Target Start/End: Original strand, 20885858 - 20886051
Alignment:
| Q |
276 |
tttggtcactatgctcgtgtactagtagatatcaatttggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgaga |
375 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||||||| ||| ||| |||||| ||| || ||||||||||||| ||| | | ||||||||| ||||| | |
|
|
| T |
20885858 |
tttggtcattatgcatgtgtgctagttgatatcaatatggctggttttcttcttgactcattgtgggttgaaaaggaaaattttacttttgacattgaaa |
20885957 |
T |
|
| Q |
376 |
ttgagtacgaaaaacttccttacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgc |
469 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
20885958 |
ttgagtatgaaaaacgtccttacttttgtttaacttgcaattctattgttcattcttccgatcattgtaaaaaagatcctcccaataatattgc |
20886051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 11367636 - 11367862
Alignment:
| Q |
19 |
gaattccgattctcatgtgcggaagatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctcgttggtcacta |
118 |
Q |
| |
|
||||| |||||||||||| || ||||||||||| || |||||||||| ||||||||||||| |||| ||| ||||||| ||||||||||| |
|
|
| T |
11367636 |
gaatttcgattctcatgtattgatgatcttagaagcgtctggtcgaatggtgcttggaacttgaa-tccgggtctgttgcgtttatttcgttggtcacct |
11367734 |
T |
|
| Q |
119 |
gattttaattcctttaatcataatcaaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcaccctaaattcctttttgaga |
218 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| |||||||| || | | ||||||| |||| |
|
|
| T |
11367735 |
gattttaatccatttaatcataatcaaactcatagccaggtatgggtgcgttttcattatcttcctctggaatattggcatccgagaatccttttcgaga |
11367834 |
T |
|
| Q |
219 |
ttgttgaggctattggtacacctatttt |
246 |
Q |
| |
|
||| | | ||||||| ||||||||||| |
|
|
| T |
11367835 |
ttgcagggactattggcacacctatttt |
11367862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 7e-36; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 276 - 477
Target Start/End: Original strand, 10865484 - 10865685
Alignment:
| Q |
276 |
tttggtcactatgctcgtgtactagtagatatcaatttggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgaga |
375 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| | ||| || |||| ||| |||||| ||||||||||| | | | | ||||| ||||||| |
|
|
| T |
10865484 |
tttggtcattatgctcgtgttctagtagatattaattttgctggatttattccggataatttgtgtgttgaaagagataattttgcctttgacattgaga |
10865583 |
T |
|
| Q |
376 |
ttgagtacgaaaaacttccttacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtga |
475 |
Q |
| |
|
||||||| ||| | | ||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||| || | |||||||||| |
|
|
| T |
10865584 |
ttgagtatgaacatcatccatacttttgtttcacttgtaattctattggtcattcatcggatcattgtaaaaaagatcctgccagtagagttgctcgtga |
10865683 |
T |
|
| Q |
476 |
aa |
477 |
Q |
| |
|
|| |
|
|
| T |
10865684 |
aa |
10865685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 325 - 477
Target Start/End: Complemental strand, 18189650 - 18189498
Alignment:
| Q |
325 |
ttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttacttttgtttcacttgcaattatattgg |
424 |
Q |
| |
|
|||||||| || |||| ||||||||||| | | | ||||||| |||||||||||||| || | | ||| ||||||||||||||||| |||| |||||| |
|
|
| T |
18189650 |
ttcctgatactctgtgtgttgaaagagataatttttcttttgacattgagattgagtatgagcatcctccatacttttgtttcacttgtaattctattgg |
18189551 |
T |
|
| Q |
425 |
tcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
|||||| ||||||||||||||| ||| | |||| |||||||| ||||||| |
|
|
| T |
18189550 |
tcattcaatagatcattgtaaaaaaaatcttaccaacaaaattgcacgtgaaa |
18189498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 396 - 477
Target Start/End: Complemental strand, 276476 - 276396
Alignment:
| Q |
396 |
tacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
||||||||||||| | |||| |||||||||||| ||||||||||||| |||||||| | |||| |||||||||||||||| |
|
|
| T |
276476 |
tacttttgtttcatctataattctattggtcattcatcggatcattgta-aaaagatcatgccaacaaaattgctcgtgaaa |
276396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 639373 - 639453
Alignment:
| Q |
396 |
tacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
||||||||||||| | |||| |||||||||||| |||||||||||| ||||||||| | |||| |||||||||||||||| |
|
|
| T |
639373 |
tacttttgtttcatctataattctattggtcattcatcggatcattgt-aaaaagatcatgccaacaaaattgctcgtgaaa |
639453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 825179 - 825259
Alignment:
| Q |
396 |
tacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
||||||||||||| | |||| |||||||||||| |||||||||||| ||||||||| | |||| |||||||||||||||| |
|
|
| T |
825179 |
tacttttgtttcatctataattctattggtcattcatcggatcattgt-aaaaagatcatgccaacaaaattgctcgtgaaa |
825259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 276 - 477
Target Start/End: Complemental strand, 13188015 - 13187814
Alignment:
| Q |
276 |
tttggtcactatgctcgtgtactagtagatatcaatttggttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgaga |
375 |
Q |
| |
|
|||||||| ||||| || || ||||| ||||||||| | ||| ||||||| || ||||||||| ||||||| ||| | | ||||||||| ||||| | |
|
|
| T |
13188015 |
tttggtcattatgcacgcgttctagttgatatcaatacgactggttttcttccagactctttgtggattgaaagggaaaattttacttttgacattgaaa |
13187916 |
T |
|
| Q |
376 |
ttgagtacgaaaaacttccttacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtga |
475 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||| ||||| || || |||||||| |||||||||||| || ||| |
|
|
| T |
13187915 |
ttgagtatgaaaaacacccttacttttgtttcactagcaattctattggtcattcttctgatcaatggaatgaagatcctgccaataaaattgatcttga |
13187816 |
T |
|
| Q |
476 |
aa |
477 |
Q |
| |
|
|| |
|
|
| T |
13187815 |
aa |
13187814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 13188147 - 13188047
Alignment:
| Q |
143 |
caaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcacccta-aattcctttttgagattgttgaggctattggtacacct |
241 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||||||| ||| |||| |||||||| |||| |||| | ||||||||||||| ||||||||| || ||| |
|
|
| T |
13188147 |
caaactcatagtcgggtatgggtttgttttcattatcttcctttggaatattggcaacctagaatttc-atttgagattgttggggctattggcacgcct |
13188049 |
T |
|
| Q |
242 |
at |
243 |
Q |
| |
|
|| |
|
|
| T |
13188048 |
at |
13188047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 15634443 - 15634873
Alignment:
| Q |
16 |
tttgaattccgattctcatgtgcggaagatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctcgttggtca |
115 |
Q |
| |
|
|||||||| || ||||| |||||||| |||||||||||||| ||||| ||| |||||||||||||| |||| || | ||| | ||||||||||| |
|
|
| T |
15634443 |
tttgaatttcgtttctcttgtgcggatgatcttagaagtgtctggtcacatggtgcttggaacttgaaa-ccgagattgctacagctttctcgttggtct |
15634541 |
T |
|
| Q |
116 |
ctagattttaattcctttaatcataatcaaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcaccctaaattcctttttg |
215 |
Q |
| |
|
| ||| |||| ||| | | || || |||||||||||||| |||||||||||||| ||||||| ||| | || |||||||| ||| | | |||| |
|
|
| T |
15634542 |
ccagaatttatttcttccagccaaaaacaaactcatagtcaggtatgggttcgtttttattatcttcctttagattattggcaacctttaactttatttg |
15634641 |
T |
|
| Q |
216 |
agattgttgaggctattggtacacctattttaattgacgaaaaatactacaaatcacttctttggtcactatgctcgtgtactagtagatatcaatttgg |
315 |
Q |
| |
|
|||||| || |||||||||||| ||||| |||||| || | ||||| |||||| ||||| || ||||| ||||| ||||| ||| | || ||| |
|
|
| T |
15634642 |
agattgctggggctattggtacgcctataacaattgatgagag-tactaaaaatcatgcttttggacattatgcacgtgtgctagttgatgttgatatgg |
15634740 |
T |
|
| Q |
316 |
ttggcattcttcctgattctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttacttttgtttcacttgcaa |
415 |
Q |
| |
|
||| ||||||| | ||||||||| ||||||||||| | ||| |||||||||||||||||||||| ||||| | ||| |||| |||||||| |||||| |
|
|
| T |
15634741 |
ctggttttcttcccaactctttgtggcttgaaagagaa-attattcttttgaaattgagattgagtatgaaaagcctccatactattgtttcaattgcaa |
15634839 |
T |
|
| Q |
416 |
ttatattggtcattcttcggatcattgtaaaaaa |
449 |
Q |
| |
|
| ||||||||||||| | ||||||||||||||| |
|
|
| T |
15634840 |
ctctattggtcattctcctgatcattgtaaaaaa |
15634873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 43 - 382
Target Start/End: Original strand, 21266802 - 21267139
Alignment:
| Q |
43 |
gatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctcgttggtcactagattttaattcctttaatcataat |
142 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||| | | | | |||||| ||||| |||||||| | ||||||||| | |||||| | | |
|
|
| T |
21266802 |
gatcttagaagtgtttggtcgaatgacttttggaacttgaagcctggatt-gttacgcttatcgcgttggtctccggattttaatctccctaatcagact |
21266900 |
T |
|
| Q |
143 |
caaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcaccctaaattcctttttgagattgttgaggctattggtacaccta |
242 |
Q |
| |
|
||||| |||||| | |||||||| ||||| |||||||| || | || |||||||| | || ||||||||||||| | || |||||||||||| |||| |
|
|
| T |
21266901 |
caaacccatagttaggtatgggtccgttttcattatcttccattagaatattggcaagatgaaatcctttttgagatagctggggctattggtaccccta |
21267000 |
T |
|
| Q |
243 |
ttttaattgacgaaaaatactacaaatcacttc-tttggtcactatgctcgtgtactagtagatatcaatttggttggcattcttcctgattctttgtgg |
341 |
Q |
| |
|
| ||||||| || || ||||| ||| || ||| |||||||| ||||||||||| ||||||||||||||||| | ||| || |||||||| || |||| |
|
|
| T |
21267001 |
taataattgatgagaa-tactagaaa-caattcatttggtcattatgctcgtgttctagtagatatcaattttgctggatttattcctgatactctgtgt |
21267098 |
T |
|
| Q |
342 |
gttgaaagagaagaatatacttttgaaattgagattgagta |
382 |
Q |
| |
|
|||||||||| | | | ||||||| |||||||||||||| |
|
|
| T |
21267099 |
tttgaaagagataatttttcttttgacattgagattgagta |
21267139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 333 - 449
Target Start/End: Original strand, 109213 - 109329
Alignment:
| Q |
333 |
tctttgtgggttgaaagagaagaatatacttttgaaattgagattgagtacgaaaaacttccttacttttgtttcacttgcaattatattggtcattctt |
432 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||| | ||| |||| |||||||| |||||| | |||||| |||||| |
|
|
| T |
109213 |
tctttgtgggttgaaagagaaaattattcttttgaaattgagattgagtatgaaaagcctccatactattgtttcaattgcaactctattggccattctc |
109312 |
T |
|
| Q |
433 |
cggatcattgtaaaaaa |
449 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
109313 |
ttgatcactgtaaaaaa |
109329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 108910 - 109079
Alignment:
| Q |
28 |
ttctcatgtgcggaagatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctcgttggtcactagattttaat |
127 |
Q |
| |
|
||||| |||||||| |||||||||| | ||||||| |||| |||||||||||||| ||| || | |||| | ||||||||||| | ||| |||| | |
|
|
| T |
108910 |
ttctcttgtgcggatgatcttagaaatatatggtcaaatggtgcttggaacttgaaa-ccgggattgctacggctttctcgttggtctccagaatttatt |
109008 |
T |
|
| Q |
128 |
tcctttaatcataatcaaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggca |
198 |
Q |
| |
|
|| | | || || |||||||||||||| |||||||| ||||| ||||||| ||||| ||||||||||| |
|
|
| T |
109009 |
tcttccagccaaaaacaaactcatagtcaggtatgggtccgtttttattatcttcctctagagtattggca |
109079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 369 - 477
Target Start/End: Original strand, 49046443 - 49046551
Alignment:
| Q |
369 |
attgagattgagtacgaaaaacttccttacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattg |
468 |
Q |
| |
|
|||||||||||||| ||| | | || ||||||||||||||||| |||| |||||| ||||| ||| |||||||||||||||||| | |||| ||||||| |
|
|
| T |
49046443 |
attgagattgagtatgaacatccaccatacttttgtttcacttgtaattctattggccattcatcgaatcattgtaaaaaagatcatgccaacaaaattg |
49046542 |
T |
|
| Q |
469 |
ctcgtgaaa |
477 |
Q |
| |
|
||||||||| |
|
|
| T |
49046543 |
ctcgtgaaa |
49046551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 26473522 - 26473603
Alignment:
| Q |
396 |
tacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||| |||| ||| |||||||||||| |
|
|
| T |
26473522 |
tacttttgtttcacttgtaattcaattggtcattcctcggatcattgtcaaaaagatcctgccaacaaatttgctcgtgaaa |
26473603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 26549962 - 26550043
Alignment:
| Q |
396 |
tacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||| |||| ||| |||||||||||| |
|
|
| T |
26549962 |
tacttttgtttcacttgtaattcaattggtcattcctcggatcattgtcaaaaagatcctgccaacaaatttgctcgtgaaa |
26550043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 243
Target Start/End: Original strand, 49046146 - 49046345
Alignment:
| Q |
43 |
gatcttagaagtgtatggtcgaatgacacttggaacttgaaatccgaaatcgttacgtttatctcgttggtcactagattttaattcctttaatcataat |
142 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||||||||| | | | | |||||| |||| |||| ||| || ||||||||| || |||||| | | |
|
|
| T |
49046146 |
gatcttagaaatgtctggtcgaatgacgcttggaacttgaagcctggatt-gttacgcatatcgcgtttgtctctggattttaatctctctaatcagact |
49046244 |
T |
|
| Q |
143 |
caaactcatagtcaagtatgggttcgtttccattatctccctctggagtattggcaccctaaattcctttttgagattgttgaggctattggtacaccta |
242 |
Q |
| |
|
||||| |||||||| ||||||| |||| |||||||| || |||| |||||||| || | ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
49046245 |
caaacccatagtcagatatgggtatgttttcattatcttccattggaatattggcatgatagaatcctttttgagattgatgaggctattggtaccccta |
49046344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0604 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 3908 - 3989
Alignment:
| Q |
396 |
tacttttgtttcacttgcaattatattggtcattcttcggatcattgtaaaaaagatccttccaataaaattgctcgtgaaa |
477 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
3908 |
tacttttgtttcacttgtaattctattggtcattcaacggatcattgtaaaaaagattatgccaacaaaattgctcgtgaaa |
3989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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