View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5435-Insertion-6 (Length: 656)

Name: NF5435-Insertion-6
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5435-Insertion-6
NF5435-Insertion-6
[»] chr4 (21 HSPs)
chr4 (11-656)||(5035110-5035757)
chr4 (167-655)||(2533805-2534294)
chr4 (22-643)||(2525259-2525881)
chr4 (79-631)||(2490641-2491195)
chr4 (100-556)||(2518821-2519279)
chr4 (80-423)||(2486021-2486373)
chr4 (84-156)||(2536575-2536647)
chr4 (276-474)||(2467212-2467413)
chr4 (335-467)||(2547221-2547353)
chr4 (79-230)||(2467446-2467597)
chr4 (350-395)||(2361217-2361262)
chr4 (346-395)||(2381641-2381690)
chr4 (346-395)||(2391269-2391318)
chr4 (350-473)||(2621417-2621540)
chr4 (355-395)||(12124594-12124634)
chr4 (365-395)||(2482529-2482559)
chr4 (79-153)||(5106306-5106380)
chr4 (511-556)||(2477156-2477201)
chr4 (339-390)||(2393836-2393888)
chr4 (591-631)||(2460107-2460147)
chr4 (591-627)||(2482279-2482315)
[»] chr2 (1 HSPs)
chr2 (87-131)||(44575183-44575227)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 656
Target Start/End: Complemental strand, 5035757 - 5035110
Alignment:
Q  11 ccgataacccccgcagaataaggtctctctaccacgtctcaaaacaagatctgtccatcaccaacagtagtttcaggtctctctccctcgtttcaaaaca 110  Q
    ||||| ||||||||||||||| ||||||||| ||||||||| |||||||| || | ||||| |||||||||||||||||||| ||| |||||||||||||    
T  5035757 ccgatcacccccgcagaataaagtctctctatcacgtctcagaacaagatatgccaatcacaaacagtagtttcaggtctctttccttcgtttcaaaaca 5035658  T
Q  111 gtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaatcgtctctttgaaaggttccctaatattaca 210  Q
    |||||| ||||||||||| || |||||||||||||||||||||||  | || ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  5035657 gtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctttgaaaggttccctaatattaca 5035558  T
Q  211 tcacttaatatcactctctctccttaagg--gggaccgagaagccgacctcggcgagtttctagcccaaatctctacttcccctttagacctcaaatcac 308  Q
    ||||| |||||||||||| || |  | |   ||  |||||||||  |||||||||||||||||||  |||||||  ||||||||||| |||||||||| |    
T  5035557 tcactcaatatcactctcacttccaatgcctggtcccgagaagctcacctcggcgagtttctagcgaaaatctccgcttcccctttaaacctcaaatcgc 5035458  T
Q  309 tcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatt 408  Q
    ||||||| |||||| ||| ||| || |||||||||||||| |||||||||||| |||||||||||| ||| || |||||| |||||||||||||||||||    
T  5035457 tcactctttaccacgctgtcagggttcctgaaaatgagttgcgagctttgtccgagaagatgaaaagtttaacgtctctcgcttgttatcaaatgagatt 5035358  T
Q  409 tatcaacaagaatgatctcaacatcattgctgattgtttcccttcccttgaagaactcatccttaccgacactggttgtccccataattgtgctatagat 508  Q
    ||||||||||||||||||   | | |||||||||||||||||||  || |||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  5035357 tatcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaagaactaatccttactgatactggttgtccccataattgtgctatagat 5035258  T
Q  509 agtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgcaataacgtctgtgggcactcaattaagaatctctgcaagaactgtg 608  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||||||| | |||| |||| |||| ||||||||||||||||||||||||| |||||    
T  5035257 agtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgtg 5035158  T
Q  609 aacttcttcaagaggtcaaagtggttggtggttgtgttgcacgatatg 656  Q
    | |||||||||||||||||||||||||||||| ||||||| |||||||    
T  5035157 accttcttcaagaggtcaaagtggttggtggtcgtgttgctcgatatg 5035110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 167 - 655
Target Start/End: Complemental strand, 2534294 - 2533805
Alignment:
Q  167 tccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagggg---gaccgagaagccgacctc-ggc 262  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |  |  | ||   | ||| |||||||||||| |||    
T  2534294 tccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctctcccgatgggtggtttgtccgtgaagccgacctctggc 2534195  T
Q  263 gagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtcca 362  Q
    |||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2534194 gagtttctagccgaactctctacttccactttagacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctttgtcca 2534095  T
Q  363 agaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttcccttgaaga 462  Q
    |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||  | | |||||||||||||||||||  ||||||||    
T  2534094 agaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaaga 2533995  T
Q  463 actcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgc 562  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||      
T  2533994 actcatccttaccgactctggttgtccccataattgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcat 2533895  T
Q  563 aataacgtctgtgggcactcaattaagaatctctgcaagaactgtgaacttcttcaagaggtcaaagtggttggtggttgtgttgcacgatat 655  Q
    |||| |||| ||| |||||||||||| ||||||||||||||||||||    ||||||||| |||||||||||||||||||  |||||||||||    
T  2533894 aatatcgtcagtgagcactcaattaaaaatctctgcaagaactgtga---ccttcaagagctcaaagtggttggtggttgctttgcacgatat 2533805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 643
Target Start/End: Complemental strand, 2525881 - 2525259
Alignment:
Q  22 cgcagaataaggtctctctaccacgtctcaaaacaagatctgtccatcaccaacagtagtttcaggtctctctccctcgtttcaaaacagtttctgtcca 121  Q
    ||||||||| |  |||||||||||||||||||||||  |||  ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  2525881 cgcagaataggaactctctaccacgtctcaaaacaatctctacccatcaccaacggtagtttcagatctctctccctcgtctcaaaacagtttctgtcca 2525782  T
Q  122 tcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatat 221  Q
    |||||||  | |||||||||||||||| ||||||||| || ||  ||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  2525781 tcaccaacagtcttcgattcttggtcacaatctccaatgcaactatcccttttcttaatcgtctctttgaaaggttccctaacattgcatcactcaatat 2525682  T
Q  222 cactctctctc-cttaa---gggggaccgagaagccgacctcggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctct 317  Q
    ||||||||||| ||  |   ||||| ||||||||| |||||| | |||||||||  ||||||||| |||| |||||||||||||||||| ||||||||||    
T  2525681 cactctctctctctcgatgcgggggcccgagaagctgacctcagtgagtttctaaaccaaatctccactttccctttagacctcaaatcgctcactctct 2525582  T
Q  318 accaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaa 417  Q
    |||||||   ||  || ||| |||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  2525581 accacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaaaatgaaaaatttgacatctctcacttgttatcaactgagatttattaacaa 2525482  T
Q  418 gaatgatctcaacatcattgctgattgtttcccttcccttgaagaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgat 517  Q
    |||||||||   | ||||||||||||||||||||   || |||||||||||||||||||||||||||||||    ||| ||||  |||||||||||||||    
T  2525481 gaatgatctgctcttcattgctgattgtttccctctactcgaagaactcatccttaccgacactggttgtcgtagtaactgtgtgatagatagtgatgat 2525382  T
Q  518 cgattcctggcgcttcccaaactccgcaggattgctttaactcgcaataacgtctgtgggcactcaattaagaatctctgcaagaactgtgaacttcttc 617  Q
    | |||| ||||||||||||||||||||||||||||||||||||  | || ||   ||   |||||| ||||||||||||||| |||||||||    ||||    
T  2525381 caattcttggcgcttcccaaactccgcaggattgctttaactcatactatcgcgggtcaacactcagttaagaatctctgcaggaactgtga---ccttc 2525285  T
Q  618 aagaggtcaaagtggttggtggttgt 643  Q
    ||||||||||||||||||||||||||    
T  2525284 aagaggtcaaagtggttggtggttgt 2525259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 79 - 631
Target Start/End: Complemental strand, 2491195 - 2490641
Alignment:
Q  79 agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta 178  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||| || || || ||||| | ||||| ||||||| | || ||| ||||||||||||    
T  2491195 agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctta 2491096  T
Q  179 atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctct--ccttaagggggaccgagaagccgacctcggcgagtttctagccca 276  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||| ||||||  ||   |  || ||| |||||  |||||| ||||| |||| |  ||    
T  2491095 atcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttggaca 2490996  T
Q  277 aatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaat 376  Q
    |||||| |||| |||||| ||||||||||| ||| |||||||| | ||   ||| || || | |||||| || ||||||||||||  || ||||||||||    
T  2490995 aatctccactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaat 2490896  T
Q  377 ttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttcccttgaagaactcatccttaccg 476  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||    | |||||||||||||||||||  || || ||||||||||| ||||    
T  2490895 ttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactcatcctaaccg 2490796  T
Q  477 acactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgcaataacgtctgtgg 576  Q
    |||  |||  |||||| |||| ||   |||| | |||||||| |||  ||| ||||||||||||||||| |||||||||| |||  |||  | |  ||      
T  2490795 acaacggtaatccccaaaattatgtgctagacaatgatgatcaattattggtgcttcccaaactccgcaagattgctttatctcttaatttcattggtaa 2490696  T
Q  577 gcactcaattaagaatctctgcaagaactgtgaacttcttcaagaggtcaaagtg 631  Q
     |||||| ||||  ||||||||||||||||||| ||||||||||||| |||||||    
T  2490695 tcactcagttaaagatctctgcaagaactgtgaccttcttcaagaggccaaagtg 2490641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 100 - 556
Target Start/End: Complemental strand, 2519279 - 2518821
Alignment:
Q  100 gtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaatcgtctctttgaaaggttcc 199  Q
    ||||||||||||||||||||||||||||| ||  |||||| ||  |||| ||||||  |    ||| ||||||||||| ||||||||||||| |||||||    
T  2519279 gtttcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcc 2519180  T
Q  200 ctaatattacatcacttaatatcactctctctccttaagg--gggaccgagaagccgacctcggcgagtttctagcccaaatctctacttcccctttaga 297  Q
    | ||  |||||||||| || |||||||||||| |  |||   ||  |||||||| | ||||| ||||| ||||| || |||| |  |||| |||||||||    
T  2519179 ccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaagacaacctcagcgagcttctaaccaaaatatgcactttccctttaga 2519080  T
Q  298 cctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttat 397  Q
    ||||| ||| |||||||||||||| |||  ||   | ||| || | | ||| | |||||||||  | || |||||||||||||||| |||||||||||||    
T  2519079 cctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttat 2518980  T
Q  398 caaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttcccttgaagaactcatccttaccgacactggttgtccccataatt 497  Q
     |||||| || |||| ||||||||||||||  | |||||||||||||||||||||  ||  ||||||||||||||||||| ||   || | || || |||    
T  2518979 taaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaactcatccttaccgataccatttataccaatgatt 2518880  T
Q  498 gtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 556  Q
      |  ||||||| ||||  || |||| |||||||||| |||||||||| ||||||||||    
T  2518879 tggtgatagatattgattttcaattcttggcgcttcctaaactccgcaagattgcttta 2518821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 80 - 423
Target Start/End: Complemental strand, 2486373 - 2486021
Alignment:
Q  80 gtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaa 179  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||| ||||| ||||||| |    ||| ||||||||||| |    
T  2486373 gttttaggtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttca 2486274  T
Q  180 tcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaag--ggggaccgagaagccgacctcggcgagtttctagcccaa 277  Q
    |||||||||| |  ||||||||||| ||||||| |  ||||||||||||||| |  |||   || || |||||   |||||||||||| ||||  | ||     
T  2486273 tcgtctcttttatgggttccctaatgttacatcccacaatatcactctctcttcccaagacaggaacagagaaagtgacctcggcgagcttcttacacat 2486174  T
Q  278 atctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatt 377  Q
    ||||| |||| |||||| |||||||||||||||||||||||| | ||   |||  | |||| |||||   | |||||||||||||| |||||||||||||    
T  2486173 atctccactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatt 2486074  T
Q  378 tgacatctc-------tcacttgttatcaaatgagatttatcaacaagaatga 423  Q
    |||||||||       ||| ||||||| |||| ||||||||||||||||||||    
T  2486073 tgacatctctcaatagtcaattgttataaaattagatttatcaacaagaatga 2486021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 2536647 - 2536575
Alignment:
Q  84 caggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctcc 156  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  2536647 caggtctctctccctcatttcaaaacagtttctgtccatcaccaaccttcttcgattcttggtcaaaatctcc 2536575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 276 - 474
Target Start/End: Complemental strand, 2467413 - 2467212
Alignment:
Q  276 aaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaa 375  Q
    ||||||| |||| |||||| ||||||||||| |||||||||||||||||    |  || |||| | ||| ||| |||||||| |||||  ||||||||||    
T  2467413 aaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaa 2467314  T
Q  376 tttgacatctctcacttgttatcaaatgagatt---tatcaacaagaatgatctcaacatcattgctgattgtttcccttcccttgaagaactcatcctt 472  Q
    ||||||||| ||||||||||| | |||    ||   |||| ||||||| |||||   | |||||||||||||||||||||  || ||||| |||||||||    
T  2467313 tttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaagagctcatcctt 2467214  T
Q  473 ac 474  Q
    ||    
T  2467213 ac 2467212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 2547353 - 2547221
Alignment:
Q  335 cctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatca 434  Q
    |||| ||||| ||| |||||||||||  | ||||||||||||||||| ||||||| |||||   |||| |  ||||||| |||||||||| |   | |||    
T  2547353 cctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttca 2547254  T
Q  435 ttgctgattgtttcccttcccttgaagaactca 467  Q
    ||||||||||||||||||  |||||||||||||    
T  2547253 ttgctgattgtttccctttacttgaagaactca 2547221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 2467597 - 2467446
Alignment:
Q  79 agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta 178  Q
    ||||||| |||||||||| |||| |||||||||||| ||||||| |||||  | ||||||||||  |||   || ||| | |  ||| ||||||| |||     
T  2467597 agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttc 2467498  T
Q  179 atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctc 230  Q
    |||||||||||||||||||||| ||||| | |||| || | |||||||||||    
T  2467497 atcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctc 2467446  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  350 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 395  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 2381641 - 2381690
Alignment:
Q  346 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 395  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2381641 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2381690  T

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Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 2391269 - 2391318
Alignment:
Q  346 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 395  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2391269 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2391318  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 350 - 473
Target Start/End: Original strand, 2621417 - 2621540
Alignment:
Q  350 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcc 449  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||| | ||| |     |||  ||||||||||||   | || |||||||||||||||    
T  2621417 cgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattcttccttgctgattgtttcc 2621516  T
Q  450 cttcccttgaagaactcatcctta 473  Q
    |||  || |||||||||| |||||    
T  2621517 ctttactcgaagaactcaacctta 2621540  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  355 tttgtccaagaagatgaaaaatttgacatctctcacttgtt 395  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 395
Target Start/End: Complemental strand, 2482559 - 2482529
Alignment:
Q  365 aagatgaaaaatttgacatctctcacttgtt 395  Q
    |||||||||||||||||||||||||||||||    
T  2482559 aagatgaaaaatttgacatctctcacttgtt 2482529  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 5106306 - 5106380
Alignment:
Q  79 agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatc 153  Q
    ||||||| |||||||||   ||| |||||||||||| ||||||||||||| || | |||||||| ||||| ||||    
T  5106306 agtttcaagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatc 5106380  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 2477201 - 2477156
Alignment:
Q  511 tgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 556  Q
    |||||||| |||  ||||||||||||||||||||| ||||||||||    
T  2477201 tgatgatcaattgttggcgcttcccaaactccgcaagattgcttta 2477156  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 2393836 - 2393888
Alignment:
Q  339 aaaatgagttccgagctttgtccaagaagatg-aaaaatttgacatctctcac 390  Q
    |||||| ||| |||||||||||| | |||||| ||||||||||||||||||||    
T  2393836 aaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctctcac 2393888  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 631
Target Start/End: Complemental strand, 2460147 - 2460107
Alignment:
Q  591 atctctgcaagaactgtgaacttcttcaagaggtcaaagtg 631  Q
    |||| |||||||| ||||| |||||||||||||||||||||    
T  2460147 atctttgcaagaattgtgaccttcttcaagaggtcaaagtg 2460107  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 627
Target Start/End: Complemental strand, 2482315 - 2482279
Alignment:
Q  591 atctctgcaagaactgtgaacttcttcaagaggtcaa 627  Q
    |||||||| |||||||||| |||||||||||||||||    
T  2482315 atctctgccagaactgtgagcttcttcaagaggtcaa 2482279  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 44575183 - 44575227
Alignment:
Q  87 gtctctctccctcgtttcaaaacagtttctgtccatcaccaatcg 131  Q
    |||||||||| |||| |||||||||||||| || |||||||||||    
T  44575183 gtctctctccatcgtctcaaaacagtttctctcaatcaccaatcg 44575227  T

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