View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5435-Insertion-7 (Length: 427)

Name: NF5435-Insertion-7
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5435-Insertion-7
NF5435-Insertion-7
[»] chr8 (9 HSPs)
chr8 (8-427)||(8690612-8691031)
chr8 (25-320)||(8704991-8705294)
chr8 (25-249)||(8740138-8740370)
chr8 (172-319)||(8722069-8722216)
chr8 (25-146)||(14372433-14372554)
chr8 (172-251)||(8723482-8723561)
chr8 (177-319)||(8738501-8738643)
chr8 (24-119)||(8738729-8738824)
chr8 (25-167)||(8723586-8723729)


Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Complemental strand, 8691031 - 8690612
Alignment:
Q  8 cacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8691031 cacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaaca 8690932  T
Q  108 agctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcataca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8690931 agctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcataca 8690832  T
Q  208 tcaacttcagctataacattgttgacgatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctga 307  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  8690831 tcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctga 8690732  T
Q  308 atccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgcnnnnnnngtagcaacaaaatgagacaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  8690731 atccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgctttttttgtagcaacaaaatgagacaa 8690632  T
Q  408 agagagactttctaatacca 427  Q
    ||||||||||||||||||||    
T  8690631 agagagactttctaatacca 8690612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 25 - 320
Target Start/End: Complemental strand, 8705294 - 8704991
Alignment:
Q  25 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 124  Q
    |||||||||||||| || || || || |||||   |||||| || ||||||||||| || ||||  |||||||  |  ||| |||||||||||||| |||    
T  8705294 ttaaaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaa 8705195  T
Q  125 aacattagaaagattgcatttttgtgagaaaataatgatggg---gtttgtt-----acctggtaaatcccaaggttcgaacttgcatacatcaacttca 216  Q
    ||||||| |||| |||||||||| |||||||||||||| |||   |||||||     ||||||||| |||||||||||  | ||||||||||||||||||    
T  8705194 aacattaaaaaggttgcatttttatgagaaaataatgaagggtttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttca 8705095  T
Q  217 gctataacattgttgacgatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag 316  Q
    |||||||||||||| || |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8705094 gctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag 8704995  T
Q  317 gaac 320  Q
    ||||    
T  8704994 gaac 8704991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 8740370 - 8740138
Alignment:
Q  25 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 124  Q
    |||||||||||||| ||||| || ||||| ||   |||||| ||||||||||||||  | ||||  ||||||||||  |||| ||||||||||||| |||    
T  8740370 ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaa 8740271  T
Q  125 aacattagaaagattgcatttttgtgagaaaataatgatggggtttgtt--------acctggtaaatcccaaggttcgaacttgcatacatcaacttca 216  Q
    |||||||  ||| ||| |||  | | ||||||||||||| |||||||||        ||||||||| |||||||||||| ||||||||||||||||||||    
T  8740270 aacattaacaaggttgaattactttaagaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttca 8740171  T
Q  217 gctataacattgttgacgatggaatcattacca 249  Q
    |||||||||||||| || |||||||||||||||    
T  8740170 gctataacattgtttacaatggaatcattacca 8740138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 8722216 - 8722069
Alignment:
Q  172 ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacgatggaatcattaccaagtaacnnnnnnnngagatagt 271  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||| |||||||| || |     ||||| |||||||||        ||||||||    
T  8722216 ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagt 8722117  T
Q  272 ggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa 319  Q
     |||||||||||||| |||||||||  |||||||||||||||||||||    
T  8722116 agtttacaagctcttgatctgttggatggaatctgaatccaacaggaa 8722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 14372433 - 14372554
Alignment:
Q  25 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 124  Q
    |||||||||||||| ||||| || ||||||||   |||||| |||||||||||||| || ||||  ||||||| ||  |||||||||||||||||| ||     
T  14372433 ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaag 14372532  T
Q  125 aacattagaaagattgcatttt 146  Q
    ||||||| |||| |||||||||    
T  14372533 aacattaaaaaggttgcatttt 14372554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 8723561 - 8723482
Alignment:
Q  172 ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacgatggaatcattaccaag 251  Q
    ||||||||||| ||||| |||||||||||||  | |||||||||||||||||||||||| || ||||  |||||||||||    
T  8723561 ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag 8723482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 8738643 - 8738501
Alignment:
Q  177 tggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacgatggaatcattaccaagtaacnnnnnnnngagatagtggttt 276  Q
    |||||| |||||||| || ||| |||| ||||||||||| ||||| |||||||| ||   |||| ||||||||||||||        ||| ||||| ||     
T  8738643 tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta 8738544  T
Q  277 acaagctcttcatctgttggtcggaatctgaatccaacaggaa 319  Q
    || || ||||||| ||||||||||||||||||||| |||||||    
T  8738543 actagttcttcatttgttggtcggaatctgaatccgacaggaa 8738501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 8738824 - 8738729
Alignment:
Q  24 gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga 119  Q
    ||||||| ||||||| |||||||| |||||||| | |||||| |||||||||||||| || ||||  |||||||| |  |||| |||||| |||||    
T  8738824 gttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgacaaaga 8738729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 8723729 - 8723586
Alignment:
Q  25 ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa 124  Q
    |||||||||||||| ||||| || ||||| ||   ||| || ||||||||||||||  | ||||  ||||||||||  |||| |||||||||| | ||||    
T  8723729 ttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctgaaaaacaacaaa 8723630  T
Q  125 aaca-ttagaaagattgcatttttgtgagaaaataatgatgggg 167  Q
    |||| | | ||| ||  ||||||||||  |||||||||||||||    
T  8723629 aacagtaataaaaatcacatttttgtgccaaaataatgatgggg 8723586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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