View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5435_high_3 (Length: 331)

Name: NF5435_high_3
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5435_high_3
NF5435_high_3
[»] chr8 (11 HSPs)
chr8 (17-331)||(22512322-22512636)
chr8 (159-331)||(23573220-23573398)
chr8 (269-331)||(42891945-42892007)
chr8 (220-328)||(26377776-26377884)
chr8 (229-331)||(22922125-22922226)
chr8 (101-281)||(2688803-2688984)
chr8 (266-311)||(24730821-24730866)
chr8 (266-326)||(37189617-37189676)
chr8 (291-331)||(6845112-6845152)
chr8 (284-331)||(23570355-23570402)
chr8 (264-330)||(18180963-18181028)
[»] chr4 (9 HSPs)
chr4 (145-331)||(22716287-22716477)
chr4 (145-331)||(22988740-22988930)
chr4 (124-331)||(6659604-6659805)
chr4 (269-331)||(22691060-22691122)
chr4 (101-270)||(10494553-10494726)
chr4 (266-330)||(24667431-24667495)
chr4 (218-272)||(9260315-9260369)
chr4 (229-327)||(13085370-13085470)
chr4 (205-281)||(7635027-7635103)
[»] chr1 (12 HSPs)
chr1 (101-331)||(13441863-13442095)
chr1 (101-310)||(31915167-31915382)
chr1 (101-303)||(40805488-40805694)
chr1 (265-331)||(50857718-50857784)
chr1 (266-331)||(13444259-13444324)
chr1 (145-331)||(23988898-23989088)
chr1 (205-293)||(10926933-10927022)
chr1 (124-206)||(8220155-8220236)
chr1 (159-303)||(10927792-10927939)
chr1 (218-275)||(8966030-8966087)
chr1 (278-310)||(43681260-43681292)
chr1 (278-310)||(31913201-31913233)
[»] chr7 (17 HSPs)
chr7 (102-331)||(1217434-1217665)
chr7 (152-331)||(13882957-13883141)
chr7 (205-315)||(4303146-4303256)
chr7 (143-294)||(11001085-11001240)
chr7 (266-331)||(859430-859495)
chr7 (266-331)||(1220707-1220772)
chr7 (266-331)||(13886461-13886526)
chr7 (145-281)||(1369488-1369629)
chr7 (266-331)||(4300306-4300371)
chr7 (147-294)||(8915432-8915582)
chr7 (218-330)||(1786426-1786539)
chr7 (266-311)||(4888947-4888992)
chr7 (266-303)||(29175573-29175610)
chr7 (266-310)||(1883290-1883334)
chr7 (101-165)||(11001256-11001320)
chr7 (266-310)||(13466547-13466590)
chr7 (266-310)||(30217608-30217652)
[»] chr3 (12 HSPs)
chr3 (229-328)||(3064016-3064115)
chr3 (151-310)||(365846-366008)
chr3 (101-281)||(8536655-8536839)
chr3 (257-331)||(43304232-43304306)
chr3 (266-331)||(53012778-53012843)
chr3 (266-331)||(43306946-43307011)
chr3 (20-85)||(35724428-35724493)
chr3 (218-310)||(2472952-2473044)
chr3 (278-328)||(3069152-3069202)
chr3 (24-85)||(35708529-35708590)
chr3 (24-85)||(35726234-35726295)
chr3 (124-170)||(43304322-43304368)
[»] chr2 (18 HSPs)
chr2 (209-331)||(27952599-27952721)
chr2 (160-331)||(31635975-31636150)
chr2 (229-331)||(22011145-22011247)
chr2 (101-281)||(280286-280469)
chr2 (179-331)||(35681913-35682068)
chr2 (104-266)||(32162254-32162419)
chr2 (265-331)||(27956435-27956501)
chr2 (229-330)||(2165637-2165737)
chr2 (266-331)||(15129168-15129233)
chr2 (266-331)||(33655376-33655441)
chr2 (145-270)||(33053094-33053222)
chr2 (152-303)||(36648555-36648710)
chr2 (296-331)||(31633884-31633919)
chr2 (266-331)||(22264186-22264250)
chr2 (268-304)||(12965751-12965787)
chr2 (266-311)||(1517980-1518026)
chr2 (220-293)||(23457389-23457461)
chr2 (218-303)||(36614846-36614931)
[»] chr5 (6 HSPs)
chr5 (183-331)||(21845164-21845316)
chr5 (123-294)||(18252071-18252246)
chr5 (264-331)||(21849245-21849312)
chr5 (264-331)||(21857159-21857226)
chr5 (229-270)||(19677630-19677671)
chr5 (284-331)||(40779061-40779108)
[»] chr6 (17 HSPs)
chr6 (144-331)||(18203109-18203298)
chr6 (160-303)||(22873500-22873647)
chr6 (170-307)||(22910496-22910637)
chr6 (251-331)||(11194401-11194480)
chr6 (170-303)||(22888953-22889090)
chr6 (266-331)||(29341066-29341131)
chr6 (126-266)||(34374074-34374218)
chr6 (229-331)||(30049630-30049730)
chr6 (229-331)||(30051917-30052017)
chr6 (162-293)||(12881715-12881849)
chr6 (229-293)||(3541960-3542024)
chr6 (151-331)||(12778631-12778813)
chr6 (215-282)||(32361106-32361173)
chr6 (101-177)||(8047760-8047836)
chr6 (229-272)||(8047661-8047704)
chr6 (218-267)||(18720020-18720069)
chr6 (262-331)||(18726879-18726947)
[»] scaffold0054 (3 HSPs)
scaffold0054 (110-281)||(48954-49127)
scaffold0054 (170-307)||(10349-10490)
scaffold0054 (152-277)||(37396-37524)
[»] scaffold0024 (2 HSPs)
scaffold0024 (101-190)||(144274-144363)
scaffold0024 (104-289)||(145364-145555)
[»] scaffold0110 (1 HSPs)
scaffold0110 (229-331)||(45891-45992)
[»] scaffold0240 (1 HSPs)
scaffold0240 (143-208)||(15676-15741)


Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 22512636 - 22512322
Alignment:
Q  17 agttaataattgaagactatcctcttgtcaatgatggtcttcaaatatgggatgcaattaaacaatgggatcctggtaaatcaattcaatggcataaagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512636 agttaataattgaagactatcctcttgtcaatgatggtcttcaaatatgggatgcaattaaacaatgggatcctggtaaatcaattcaatggcataaagg 22512537  T
Q  117 caattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatgggaagctt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  22512536 caattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtcttatgttcgttggatgagtcaacatgggaagctt 22512437  T
Q  217 cttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaa 316  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22512436 cttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagctaa 22512337  T
Q  317 atcttagtaattttc 331  Q
    |||||||||||||||    
T  22512336 atcttagtaattttc 22512322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 159 - 331
Target Start/End: Original strand, 23573220 - 23573398
Alignment:
Q  159 tcaatgggatccaggagggcggt---ctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttcttta 251  Q
    ||||||||| ||||||||| |||   || |||||| ||||| |||||||||||    |||||||  |||||| ||| | ||||| ||||||||||||| |    
T  23573220 tcaatgggaaccaggagggtggtggtcttttgttcattggaggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttca 23573319  T
Q  252 gaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||||||| ||| || || ||||  ||||||||||  |||||||||||||||| |||||||||||||||||||    
T  23573320 gaggtggaggagactaatgtagaagggtttc-ttagtaattttatagtatttattatttaaccaaatcttagtaattttc 23573398  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 42892007 - 42891945
Alignment:
Q  269 tgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42892007 tgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttc 42891945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 26377776 - 26377884
Alignment:
Q  220 atcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatc 319  Q
    |||| ||| |||||| |||||||||||||| | |||||||||||||||||| ||||| ||||| ||||||||||| ||||| || |  ||||||| |||     
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagtaatttattagtaattttattttagcctaatt 26377875  T
Q  320 ttagtaatt 328  Q
    |||||||||    
T  26377876 ttagtaatt 26377884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 22922226 - 22922125
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaatt 328  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||  |||||||| |  ||||| ||||||||||| |||    
T  22922226 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatagtattt-tattttagtcaaatcttagtgatt 22922128  T
Q  329 ttc 331  Q
    |||    
T  22922127 ttc 22922125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 281
Target Start/End: Original strand, 2688803 - 2688984
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 200  Q
    |||||||| |||||||||| ||||||||||| | ||| ||  ||||||| |||||||| |||||||||||| ||||| | |||| ||||| ||||| |||    
T  2688803 ttcaatgggataaaggcaactactatatttt-cgaactaaaccatcttttcatttcacccaatgggatccatgagggtgatctcatgttcattggaggag 2688901  T
Q  201 tcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 281  Q
    ||||    |||||||| ||   ||| | ||| |||||||| | |||||||||| | |||||||||||||| ||| ||||| ||||    
T  2688902 tcaacatgcatgggaaact--ctattagaatgagaactcgtgatcgagttcttcataggtggaggagactcatgtaggagggttt 2688984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 24730821 - 24730866
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattattta 311  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||    
T  24730821 tgatgcaggagggttttattagtaatttagtagtatttatgattta 24730866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 37189617 - 37189676
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaa 326  Q
    |||| |||||||||||| |||||||||||||||||||| |  |||||||||||||||||||    
T  37189617 tgatccaggagagttttcttagtaatttagtagtattt-tattttagccaaatcttagtaa 37189676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 6845112 - 6845152
Alignment:
Q  291 tttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  6845112 tttattagtatttattatttagtcaaatcttagtaattttc 6845152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 23570355 - 23570402
Alignment:
Q  284 ttagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||  ||||||||||||||||  ||||||||||||||||||    
T  23570355 ttagtaattttatagtatttattatttaatcaaatcttagtaattttc 23570402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 18181028 - 18180963
Alignment:
Q  264 actgatgcaggagagttttattagtaatttagtagtatttattatttagc-caaatcttagtaatttt 330  Q
    ||||||| |||| |||||| |||||||||||||||||||  ||||||| | ||||||||| |||||||    
T  18181028 actgatgtaggacagttttcttagtaatttagtagtatt--ttatttaactcaaatcttaataatttt 18180963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 145 - 331
Target Start/End: Original strand, 22716287 - 22716477
Alignment:
Q  145 tctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggt 240  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||| ||||| |||||||||||    |||||||  |||||| ||| ||||||||||||    
T  22716287 tctttgcatttcactcaatgtgattcaggagggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggt 22716386  T
Q  241 cgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  22716387 cgagttctttagagctggaggagactgatgcagttgagttttattagtaatttaatagtatttattatttagccaaatcttaataattttc 22716477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 145 - 331
Target Start/End: Complemental strand, 22988930 - 22988740
Alignment:
Q  145 tctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggt 240  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||| ||||| |||||||||||    |||||||  |||||| ||| ||||||||||||    
T  22988930 tctttgcatttcactcaatgtgattcaggagggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggt 22988831  T
Q  241 cgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  22988830 cgagttctttagagctggaggagactgatgcagttgagttttattagtaatttaatagtatttattatttagccaaatcttaataattttc 22988740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 331
Target Start/End: Complemental strand, 6659805 - 6659604
Alignment:
Q  124 tatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttctt 219  Q
    |||||||||||||||||   ||||| |||||||||||||||||||||||| ||         ||||| ||||| |||||||    |||||||||||  ||    
T  6659805 tatatttttcaaaccaaacaatcttggcatttcactcaatgggatccaggtgga--------tgttctttggaggagtcaatattcatgggaagctcttt 6659714  T
Q  220 atcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatc 319  Q
    ||||  || |||| | ||| |||||||||| |||||| ||||||||||||| ||||| ||||  ||||||||||   |||||||||||||||||||||||    
T  6659713 atcaagatgagaatttggg-tcgagttcttcagaggtagaggagactgatgtaggagggtttc-ttagtaattttacagtatttattatttagccaaatc 6659616  T
Q  320 ttagtaattttc 331  Q
    ||||||||||||    
T  6659615 ttagtaattttc 6659604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 22691060 - 22691122
Alignment:
Q  269 tgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22691060 tgcaggagggttttattaataatttagtagtatttattatttagccaaatcttagtaattttc 22691122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 270
Target Start/End: Original strand, 10494553 - 10494726
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 200  Q
    |||||||| |||| ||||| | |||||||||| |||||||   |||||||||||||||||| ||| || ||  |||| |||||||||||| ||||| |||    
T  10494553 ttcaatgggataagggcaactgctatattttttaaaccaaactatctttgcatttcactcagtggaattcaaaagggtggtctcttgttcattggaggag 10494652  T
Q  201 tcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatg 270  Q
    || |    |||||||||||  ||||||  || |||||| | |||||||||||| ||| || ||| |||||||||    
T  10494653 tcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatg 10494726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 24667431 - 24667495
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaatttt 330  Q
    ||||||||||| | ||||||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  24667431 tgatgcaggagggctttattattaatttagtagtagttattatttagccaaatcgtagtaatttt 24667495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 9260315 - 9260369
Alignment:
Q  218 ttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgca 272  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||| |||||||    
T  9260315 ttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatgca 9260369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 13085470 - 13085370
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagag---ttttattagtaatttagtagtatttattatttagccaaatcttagta 325  Q
    ||||||||||||||||||||| |||| |||| |||||||||| ||||| |   |||| ||||||||||  |||||||| |  |||||||| |||||||||    
T  13085470 agaactcggggtcgagttcttcagagatggaagagactgatgtaggagggtgttttttttagtaattttatagtattt-tattttagccacatcttagta 13085372  T
Q  326 at 327  Q
    ||    
T  13085371 at 13085370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 7635027 - 7635103
Alignment:
Q  205 catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 281  Q
    |||||| ||||| |||| | ||| |||| | |||||||||||||| |||| |||||||||||||||  |||||||||    
T  7635027 catggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatgtgggagagttt 7635103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 101 - 331
Target Start/End: Complemental strand, 13442095 - 13441863
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 200  Q
    |||||||| ||||||| || |  | |||||||||||||||   |||||||||||||||||||||||||||||||||  | ||||||| || ||||| |||    
T  13442095 ttcaatggtataaaggaaactgttttatttttcaaaccaaactatctttgcatttcactcaatgggatccaggaggatgatctcttgctcattggaggag 13441996  T
Q  201 tcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagt 296  Q
    ||||||||    |||||||  |||||| ||| |||||| |   |||| ||||| ||||||||||||||||||||||| || ||||| |||||||||||||    
T  13441995 tcaacatgcatgggaagctctttatcagaatgagaacttga--tcgaattcttcagaggtggaggagactgatgcagaagggttttgttagtaatttagt 13441898  T
Q  297 agtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||||||||||||||| |||||||||||    
T  13441897 agtatttattatttagccaaatcatagtaattttc 13441863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 101 - 310
Target Start/End: Original strand, 31915167 - 31915382
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 200  Q
    |||||||| ||||||||||   | ||||||| ||||||||  |||||||  |||||||||||| ||||||||||||  | |||||||||| ||||| |||    
T  31915167 ttcaatgggataaaggcaacatcaatattttacaaaccaaaccatctttagatttcactcaatcggatccaggaggtag-tctcttgttcattggaggag 31915265  T
Q  201 tcaaca-tg---ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggag---gagactgatgcaggagagttttattagtaattt 293  Q
    |||||| ||   ||||   |||||| | ||  |||||||||||| |||||||| ||||||||||   |||||||||||| ||| ||||||||||||||||    
T  31915266 tcaacaatgaatggaaaactcttattagaacgagaactcggggttgagttcttcagaggtggaggaggagactgatgcatgagggttttattagtaattt 31915365  T
Q  294 agtagtatttattattt 310  Q
    |||||||||||||||||    
T  31915366 agtagtatttattattt 31915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 101 - 303
Target Start/End: Original strand, 40805488 - 40805694
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 200  Q
    |||||||| |||||| ||| | ||||||| | |||| ||| |||||||||||||||| |||||| ||| |||||||| | || ||||||| | ||| |||    
T  40805488 ttcaatgggataaagacaactgctatattctccaaatcaaatcatctttgcatttcattcaatgagattcaggagggtgatcccttgttcatcggaggag 40805587  T
Q  201 tcaacatgg----gaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagt 296  Q
    ||| ||||     ||| || ||||||| || |||||||||||||||| ||||||| |||||||||||||||||| |||| |||||  ||| |||||| ||    
T  40805588 tcatcatgcatgtgaaactccttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtaggatagtttccttattaattttgt 40805687  T
Q  297 agtattt 303  Q
    |||||||    
T  40805688 agtattt 40805694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 265 - 331
Target Start/End: Complemental strand, 50857784 - 50857718
Alignment:
Q  265 ctgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50857784 ctgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 50857718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 13444324 - 13444259
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13444324 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaattttagtaattttc 13444259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 331
Target Start/End: Original strand, 23988898 - 23989088
Alignment:
Q  145 tctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggt 240  Q
    ||||| ||||| |||||||||||||||| |||| | ||||||| || ||| | |||| ||||||    |||||||  ||| || ||  |||||||  |||    
T  23988898 tctttacatttaactcaatgggatccagaagggtgatctcttgctcattgaaggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggt 23988997  T
Q  241 cgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||| ||||||| |||||||| ||| ||||| ||||  ||||||||||  |||||||| |  ||||||||||| ||||||||||||    
T  23988998 cgagttcttcagaggtgtaggagactaatgtaggagggtttccttagtaatttcatagtatttttattttagccaaattttagtaattttc 23989088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 10926933 - 10927022
Alignment:
Q  205 catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcagga-gagttttattagtaattt 293  Q
    ||||||||| |  |||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||| || ||| |||||||||||    
T  10926933 catgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggatgattttcattagtaattt 10927022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 8220155 - 8220236
Alignment:
Q  124 tatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaaca 206  Q
    |||||| ||||||||| | ||||| |||||||||||||||||||||||||||||  |||||||||||  |||| |||||||||    
T  8220155 tatattattcaaacca-gccatctatgcatttcactcaatgggatccaggagggtcgtctcttgttcactggaggagtcaaca 8220236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 10927792 - 10927939
Alignment:
Q  159 tcaatgggatccaggagggcggtctcttgttcgttggatgagtcaac----atgggaagcttcttatcataataagaactcggggtcgagttctttagag 254  Q
    ||||||||||| ||||||| |||||||||||  ||| | ||||||||    ||| ||| ||  |||| | ||| ||||||||||||||||||||| |||     
T  10927792 tcaatgggatctaggaggg-ggtctcttgtttattgtaagagtcaacttgcatgagaaactctttattagaatgagaactcggggtcgagttcttcagaa 10927890  T
Q  255 gtggaggagactgatgcaggagagttttattagtaatttagtagtattt 303  Q
    ||||||||||||| || ||||| ||||  ||||||||||  ||||||||    
T  10927891 gtggaggagactgttgtaggagggtttccttagtaattttatagtattt 10927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 8966087 - 8966030
Alignment:
Q  218 ttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcagga 275  Q
    |||||| ||| ||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  8966087 ttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtagga 8966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 43681260 - 43681292
Alignment:
Q  278 gttttattagtaatttagtagtatttattattt 310  Q
    |||||||||||||||||||||||||||||||||    
T  43681260 gttttattagtaatttagtagtatttattattt 43681292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 31913201 - 31913233
Alignment:
Q  278 gttttattagtaatttagtagtatttattattt 310  Q
    ||||||||||||||||||||||||||| |||||    
T  31913201 gttttattagtaatttagtagtatttagtattt 31913233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 102 - 331
Target Start/End: Complemental strand, 1217665 - 1217434
Alignment:
Q  102 tcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagt 201  Q
    ||||||| |||||||||| | |||||||||||||||||    |||||| ||||||| || |||||||||||||||| |||||||||||  ||||| ||      
T  1217665 tcaatgggataaaggcaactgctatatttttcaaaccagactatctttacatttcattctatgggatccaggagggtggtctcttgttaattggaggaca 1217566  T
Q  202 caacatg---ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 298  Q
    | |||||   | || ||  |||||| ||   ||||||||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||| |||||    
T  1217565 cgacatgcatgaaatctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtggaggagactgatgcaggagggttttattagtaattcagtag 1217467  T
Q  299 tatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||||||||||||||||||||||||    
T  1217466 tatttattatttagccaaatcttagtaattttc 1217434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 152 - 331
Target Start/End: Complemental strand, 13883141 - 13882957
Alignment:
Q  152 atttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacat------gggaagcttcttatcataataagaactcggggtcgagt 245  Q
    |||||| ||||||||||||||||||| |||||||||||  ||||| ||| ||||||      | ||| ||  |||| | ||| |||||||||| ||||||    
T  13883141 atttcattcaatgggatccaggagggtggtctcttgtttattggaggagccaacatatgcatgagaatctctttattagaatgagaactcggg-tcgagt 13883043  T
Q  246 tctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13883042 tctttagaggtggacgagactgatgcaggagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttc 13882957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 4303146 - 4303256
Alignment:
Q  205 catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtattta 304  Q
    |||||||||||  |||||| ||| |||||||||| |||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  4303146 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaatttagtagtattta 4303245  T
Q  305 ttatttagcca 315  Q
    |||||||||||    
T  4303246 ttatttagcca 4303256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 143 - 294
Target Start/End: Complemental strand, 11001240 - 11001085
Alignment:
Q  143 catctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggg 238  Q
    ||||||| ||||||||||||||||||||||||||  | |||||| ||| ||||| |||| ||||||    |||||||  |||||| ||| |||| | |||    
T  11001240 catctttacatttcactcaatgggatccaggaggatgatctctttttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatttggg 11001141  T
Q  239 gtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattta 294  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||  |||||| ||||    
T  11001140 gtcgagttcttcagaggtggaggagactgatgtaggagggtttccttagtatttta 11001085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 859495 - 859430
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  859495 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 859430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 1220772 - 1220707
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1220772 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 1220707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 13886526 - 13886461
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13886526 tgatgcagaagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttc 13886461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 281
Target Start/End: Original strand, 1369488 - 1369629
Alignment:
Q  145 tctttgcatttcactcaatgggatccaggagggcggtctctt-gttcgttggatgagtcaacat----gggaagcttcttatcataataagaactcgggg 239  Q
    |||||| |||||| |||||||||||  |||||| |||| ||| |||| ||||| ||||||||||    ||||||||  |||||| ||||||||||||||     
T  1369488 tctttgaatttcattcaatgggatcgtggagggtggtcgctttgttcattggaggagtcaacattcatgggaagctctttatcagaataagaactcgggc 1369587  T
Q  240 tcgagttctttagaggtggaggagactgatgcaggagagttt 281  Q
    |||||||||| |||||||||||||||| |||||  |||||||    
T  1369588 tcgagttcttcagaggtggaggagactcatgcacaagagttt 1369629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 4300306 - 4300371
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  4300306 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttc 4300371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 294
Target Start/End: Complemental strand, 8915582 - 8915432
Alignment:
Q  147 tttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg---ggaagcttcttatcataataagaactcggggtcga 243  Q
    |||||||||||| |||||| ||| || |||  |||||||||||| | ||| |||||||||||   || ||||| |||| | ||| |||| |||||||| |    
T  8915582 tttgcatttcacccaatggcatctagaaggttggtctcttgttcatcggaggagtcaacatgcatgggagctttttattagaatgagaattcggggtcta 8915483  T
Q  244 gttctttagaggtggaggagactgatgcaggagagttttattagtaattta 294  Q
    |||||| |||| ||||||||||||||| ||||| ||||  |||||| ||||    
T  8915482 gttcttcagagatggaggagactgatgtaggagggtttccttagtatttta 8915432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 1786426 - 1786539
Alignment:
Q  218 ttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatt-tagtagtatttattatttagccaa 316  Q
    |||||| ||| |||||||| |||||||||||| |||||||||||||||| ||| ||||  ||||| ||||||||| || |||||||| |  ||||  |||    
T  1786426 ttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtaggaaggttttcttagtaattatattagtatttttattttaaacaa 1786525  T
Q  317 atcttagtaatttt 330  Q
    || |||||||||||    
T  1786526 attttagtaatttt 1786539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 4888992 - 4888947
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattattta 311  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  4888992 tgatgcaggagaattttattagtaatttagtagtatttattattta 4888947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 29175573 - 29175610
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtattt 303  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  29175573 tgatgcaggagggttttattagtaatttagtagtattt 29175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 1883290 - 1883334
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattattt 310  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||||    
T  1883290 tgatgtaggagggttttattagtaacttagtagtatttattattt 1883334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 11001320 - 11001256
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgg 165  Q
    ||||||||||||||||||| |  |||||||| |||| |||  ||||||| |||||||||||||||    
T  11001320 ttcaatggcataaaggcaactgttatattttccaaaacaaaccatctttacatttcactcaatgg 11001256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 13466547 - 13466590
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattattt 310  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||||    
T  13466547 tgatgcaggagggttttat-agtaatttagttgtatttattattt 13466590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 30217608 - 30217652
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattattt 310  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||    
T  30217608 tgatgcaagagggttttataactaatttagtagtatttattattt 30217652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 3064115 - 3064016
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaatt 328  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3064115 agaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttgttagtaatttagtagtatttattatttagccaaatcttagtaatt 3064016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 151 - 310
Target Start/End: Complemental strand, 366008 - 365846
Alignment:
Q  151 catttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg---ggaagcttcttatcataataagaactcggggtcgagttc 247  Q
    |||||||||||||||||||| |||||| |||||| ||||| ||||| ||||||||||    |||||||  |||||| ||  |||||||| ||||||||||    
T  366008 catttcactcaatgggatcccggagggtggtctcctgttcattggaagagtcaacatacatggaagctctttatcaaaacgagaactcgaggtcgagttc 365909  T
Q  248 tttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattattt 310  Q
    || |||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  365908 ttcagaggtggaggagattgatgcaggaggattttattagtaatttagtagtatttattattt 365846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 101 - 281
Target Start/End: Complemental strand, 8536839 - 8536655
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 200  Q
    ||||||||||||||||||| | ||||| |||| |||| ||  ||||||||||||| ||||||||||||||||||||| | |||||||||| ||||| |||    
T  8536839 ttcaatggcataaaggcaactgctatagtttttaaacgaaaccatctttgcattttactcaatgggatccaggagggtgatctcttgttcattggaagag 8536740  T
Q  201 tcaac----atgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 281  Q
    |||||    ||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| ||||    
T  8536739 tcaacatatatgagaaactttttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatgtaggagggttt 8536655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 43304306 - 43304232
Alignment:
Q  257 ggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43304306 ggaggagactgatgcaggagggttttattagtaatttagtagcatttattatttagccaaatcttagtaattttc 43304232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 53012778 - 53012843
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53012778 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 53012843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 43307011 - 43306946
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43307011 tgatgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttc 43306946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 35724428 - 35724493
Alignment:
Q  20 taataattgaagactatcctcttgtcaatgatggtcttcaaatatgggatgcaattaaacaatggg 85  Q
    |||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  35724428 taataattgaagactacccttttgccaatgatggtcttctaatatgggatgcaattaaacaatggg 35724493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 310
Target Start/End: Complemental strand, 2473044 - 2472952
Alignment:
Q  218 ttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattattt 310  Q
    |||||| ||| ||||||||||||||||||||||| | ||||||||  ||||| ||  |  |||||||||||||||||||||||||||||||||    
T  2473044 ttatcagaatgagaactcggggtcgagttctttaaaagtggaggaagctgatacacaaaggttttattagtaatttagtagtatttattattt 2472952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 3069202 - 3069152
Alignment:
Q  278 gttttattagtaatttagtagtatttattatttagccaaatcttagtaatt 328  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3069202 gttttattagtaatttagtagtatttattatttagccaaatctttgtaatt 3069152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 35708529 - 35708590
Alignment:
Q  24 aattgaagactatcctcttgtcaatgatggtcttcaaatatgggatgcaattaaacaatggg 85  Q
    |||||||||||| ||| ||| |||||||||||||| ||||||||||||||| ||||||||||    
T  35708529 aattgaagactacccttttgccaatgatggtcttctaatatgggatgcaatcaaacaatggg 35708590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 35726295 - 35726234
Alignment:
Q  24 aattgaagactatcctcttgtcaatgatggtcttcaaatatgggatgcaattaaacaatggg 85  Q
    |||||||||||| ||| ||| ||||||||||||||  |||||||||||||| ||||||||||    
T  35726295 aattgaagactacccttttgccaatgatggtcttctcatatgggatgcaatcaaacaatggg 35726234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 43304368 - 43304322
Alignment:
Q  124 tatatttttcaaaccaagtcatctttgcatttcactcaatgggatcc 170  Q
    |||||||||||||||||   ||||| |||||||||||||||||||||    
T  43304368 tatatttttcaaaccaaacaatcttggcatttcactcaatgggatcc 43304322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 209 - 331
Target Start/End: Complemental strand, 27952721 - 27952599
Alignment:
Q  209 ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattat 308  Q
    |||||||  |||||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  27952721 ggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggttttattaataatttagtagtatttattat 27952622  T
Q  309 ttagccaaatcttagtaattttc 331  Q
    ||| |||||||||||||||||||    
T  27952621 ttatccaaatcttagtaattttc 27952599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 160 - 331
Target Start/End: Original strand, 31635975 - 31636150
Alignment:
Q  160 caatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagagg 255  Q
    ||||||||||| || ||| |  ||||||||| ||||| |||||||||||    |||| ||  |||||  ||| |||||||||  |||||||||| |||||    
T  31635975 caatgggatccgggtgggtgtgctcttgttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagagg 31636074  T
Q  256 tggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31636075 tggaggagactgatgtaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 31636150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 22011145 - 22011247
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaatt 328  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||    
T  22011145 agaactcagggtcgagttctttagaggtggaggagagtgatgcaggagggttttatctttaatttagtagtatttattatttagccaaatcttagtaatt 22011244  T
Q  329 ttc 331  Q
    |||    
T  22011245 ttc 22011247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 281
Target Start/End: Complemental strand, 280469 - 280286
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 200  Q
    |||||||||||||| |||| | ||||||||| |||| |||  ||||| |||||||||||||||||||||||| |||  ||||||| |||| ||||| ||     
T  280469 ttcaatggcataaaagcaactgctatattttccaaatcaaaccatctatgcatttcactcaatgggatccagaaggatggtctct-gttcattggaggat 280371  T
Q  201 tcaacatgg----gaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 281  Q
    ||||||||     ||||||  |||||| ||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  280370 tcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtagaagagttt 280286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 179 - 331
Target Start/End: Original strand, 35681913 - 35682068
Alignment:
Q  179 ggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcagg 274  Q
    |||||||||||| ||| | |||||||||||    | |||||  |||||| ||  |||||| |||||||||||||| ||||||||||||||||||||||||    
T  35681913 ggtctcttgttcattgaaggagtcaacatgcatagaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcagg 35682012  T
Q  275 agagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    || ||||| ||||||||||  |||||||| |  ||||||||||||||||||||||||    
T  35682013 agggttttcttagtaattttatagtattt-tattttagccaaatcttagtaattttc 35682068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 266
Target Start/End: Complemental strand, 32162419 - 32162254
Alignment:
Q  104 aatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtca 203  Q
    |||||||||||||||| ||||||||||| |||| |||  ||||||  ||||||||||||||||||| ||||||| |||||||||||| || || ||||||    
T  32162419 aatggcataaaggcaactactatattttccaaagcaaaccatcttctcatttcactcaatgggatcaaggagggtggtctcttgttcattaga-gagtca 32162321  T
Q  204 a----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagact 266  Q
    |    |||||||||||  |||||| ||| |||||||  ||| ||||| || |||| |||||||||||    
T  32162320 acatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagact 32162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 265 - 331
Target Start/End: Complemental strand, 27956501 - 27956435
Alignment:
Q  265 ctgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27956501 ctgatgtaggagggttttattagtaatttagtagtatttattatttatccaaatcttagtaattttc 27956435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 2165637 - 2165737
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaatt 328  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||  |||||||| |  ||||| ||||||||||| |||    
T  2165637 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagtaattttatagtattt-tattttagtcaaatcttagtgatt 2165735  T
Q  329 tt 330  Q
    ||    
T  2165736 tt 2165737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 15129168 - 15129233
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  15129168 tgatgcaggagggttttattaataatttagtagtatttattatttaaccaaatcttagtaattttc 15129233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 33655376 - 33655441
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  33655376 tgatgcaggagggttttattggtaatttagtagtatctattatttagccaaatcttagtaattttc 33655441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 33053094 - 33053222
Alignment:
Q  145 tctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatgg----gaagcttcttatcataataagaactcggggt 240  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||  || || ||||| |||||     ||||||  |||| | ||||||||| ||||||    
T  33053094 tctttgcattccactcaatgggattcaggagggtggtctcttgtttattagaggagtcgacatgaatgagaagctctttattagaataagaac-cggggt 33053192  T
Q  241 cgagttctttagaggtggaggagactgatg 270  Q
    ||||||||| ||||||||||||||||||||    
T  33053193 cgagttcttcagaggtggaggagactgatg 33053222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 303
Target Start/End: Original strand, 36648555 - 36648710
Alignment:
Q  152 atttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg---ggaagct-tcttatcataataagaactcggggtcgagttc 247  Q
    |||||| ||||| ||||| | ||||| |||||||| ||| ||||| |||||| ||||   ||||||  | |||||| || ||||||| || |||||||||    
T  36648555 atttcaatcaataggatctaagagggtggtctcttattcattggaagagtcatcatgcatggaagcacttttatcagaacaagaactgggagtcgagttc 36648654  T
Q  248 tttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtattt 303  Q
    || | || ||||||||||| ||| ||||| ||||  ||||||||||| ||||||||    
T  36648655 ttcatagatggaggagactcatgtaggagggtttccttagtaatttattagtattt 36648710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 31633884 - 31633919
Alignment:
Q  296 tagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||||||||||||||||||||||||||||    
T  31633884 tagtatttattatttagccaaatcttagtaattttc 31633919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 22264186 - 22264250
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||| ||  |||| ||||||||||||||||||||  | ||||||||||||||||||||||||    
T  22264186 tgatgcagaaggattttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttc 22264250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 12965751 - 12965787
Alignment:
Q  268 atgcaggagagttttattagtaatttagtagtattta 304  Q
    |||||| ||||||||||||||||||||||||||||||    
T  12965751 atgcagaagagttttattagtaatttagtagtattta 12965787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 1517980 - 1518026
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagta-tttattattta 311  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  1517980 tgatgcaggagggttttcttagtaatttagtagtattttattattta 1518026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 23457389 - 23457461
Alignment:
Q  220 atcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 293  Q
    |||| ||| ||||||||||   |||||||| ||||||||||| |||||||| ||||| ||||| ||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtaggag-gttttcttagtaattt 23457461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 36614846 - 36614931
Alignment:
Q  218 ttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtattt 303  Q
    |||||| || || ||||||| ||||||||||| | || ||||||||||| | | ||||| ||||  ||||||||||| ||||||||    
T  36614846 ttatcagaacaaaaactcggagtcgagttcttcatagatggaggagactcacgtaggagggtttccttagtaatttattagtattt 36614931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 183 - 331
Target Start/End: Complemental strand, 21845316 - 21845164
Alignment:
Q  183 tcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagag 278  Q
    |||||||| ||||| |||||||||||    |||||||  |||||| ||| ||||||||||||||||||||| |||||||||  ||||||||||| ||| |    
T  21845316 tcttgttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaacagactgatgcaagaggg 21845217  T
Q  279 ttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||| ||||||||||  |||||||||||||||| |||||||||||||||||||    
T  21845216 ttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttc 21845164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 294
Target Start/End: Original strand, 18252071 - 18252246
Alignment:
Q  123 ctatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttct 218  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||| |||||||| |||||||||| | ||||| ||||| |||||    | |||||  |    
T  18252071 ctatatttttcaaaccaaaccatctttgcatttcactaaatgggattcaggagggtggtctcttgtccattggaggagtccacatgcatggaaagctgtt 18252170  T
Q  219 tatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattta 294  Q
    ||||||||| ||||||||||||| ||||||| |||||| |||||| |||||||||||| ||||  |||||| ||||    
T  18252171 tatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgcaggagggtttccttagtatttta 18252246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 21849312 - 21849245
Alignment:
Q  264 actgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||| ||| ||||| ||||||||||  |||||||||||||||| |||||||||||||||||||    
T  21849312 actgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttc 21849245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 21857226 - 21857159
Alignment:
Q  264 actgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||| ||| ||||| ||||||||||  |||||||||||||||| |||||||||||||||||||    
T  21857226 actgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttc 21857159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 19677671 - 19677630
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatg 270  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  19677671 agaactcggggtcgagttcttcagaggtggaggagactgatg 19677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 40779108 - 40779061
Alignment:
Q  284 ttagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||    
T  40779108 ttagtaattttacagtatttattatttagccaaatcttagtaattttc 40779061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 144 - 331
Target Start/End: Original strand, 18203109 - 18203298
Alignment:
Q  144 atctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcgggg 239  Q
    ||||| |||||||||| ||||||||| ||||||| |||||||||||| || || |||||||||||    | || ||  |||| | ||| ||||||||||     
T  18203109 atcttggcatttcactgaatgggatctaggagggtggtctcttgttcattcgaggagtcaacatgcatggaaaactctttattaaaatgagaactcggg- 18203207  T
Q  240 tcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||| |||||||||||||||||||| ||||| ||||  | ||||||||  ||||||||||||||||| ||||||||||||||||||    
T  18203208 tcgagttcttcagaggtggaggagactgatgtaggagggtttc-tcagtaattttatagtatttattatttagtcaaatcttagtaattttc 18203298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 303
Target Start/End: Original strand, 22873500 - 22873647
Alignment:
Q  160 caatgggatccaggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagagg 255  Q
    ||||||||||||||||||  ||||||||||| ||||| |||||||    |||||||||||  |||||||||| |||||| ||| |||| ||| |||||||    
T  22873500 caatgggatccaggagggttgtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagagg 22873599  T
Q  256 tggaggagactgatgcaggagagttttattagtaatttagtagtattt 303  Q
    |||| |||||||||| ||||| ||||| ||| ||||||| ||||||||    
T  22873600 tggatgagactgatgtaggagggttttcttaataatttattagtattt 22873647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 22910496 - 22910637
Alignment:
Q  170 caggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagac 265  Q
    ||||||||  ||||||||||| ||||| |||||||    |||||||||||  |||||||||| |||||| |||||| | ||| ||||||||||| |||||    
T  22910496 caggagggttgtctcttgttcattggaggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagac 22910595  T
Q  266 tgatgcaggagagttttattagtaatttagtagtatttatta 307  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||    
T  22910596 tgatgtaggagggttttcttagtaatttattagtatttatta 22910637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 11194401 - 11194480
Alignment:
Q  251 agaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |  ||||||||||||||||||||||||    
T  11194401 agaggtggaggagactgatgtaggagagttttcttagtaatttagtagtattt-tattttagccaaatcttagtaattttc 11194480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 22888953 - 22889090
Alignment:
Q  170 caggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagac 265  Q
    ||||||||  ||||||||||| ||||| |||||||    |||||||||||  |||||||||| |||||| |||||| | ||| ||||||||||| |||||    
T  22888953 caggagggttgtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagac 22889052  T
Q  266 tgatgcaggagagttttattagtaatttagtagtattt 303  Q
    ||||| ||||| ||||| ||||||||||| ||||||||    
T  22889053 tgatgtaggagggttttcttagtaatttattagtattt 22889090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 29341131 - 29341066
Alignment:
Q  266 tgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29341131 tgatgtaggagggttttattagtaatttagtagtatttattttttagccaaatcttagtaattttc 29341066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 126 - 266
Target Start/End: Complemental strand, 34374218 - 34374074
Alignment:
Q  126 tatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttat 221  Q
    ||||||||||| |||  |||||  ||| |||||||||||||||||| ||| | |||||||||||| ||||| |||||||||||    |||| ||  ||||    
T  34374218 tatttttcaaatcaaaccatctccgcaattcactcaatgggatccaagagagtggtctcttgttcattggaagagtcaacatgcatgggaatctctttat 34374119  T
Q  222 cataataagaactcggggtcgagttctttagaggtggaggagact 266  Q
    || ||| |||||||||||| |||||||| ||| ||||||||||||    
T  34374118 caaaatgagaactcggggtggagttcttcagatgtggaggagact 34374074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 30049630 - 30049730
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaatt 328  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||  |||||||  || ||||||||||| ||||| |||    
T  30049630 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatagtatt--ttttttagccaaattttagtgatt 30049727  T
Q  329 ttc 331  Q
    |||    
T  30049728 ttc 30049730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 30051917 - 30052017
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaatt 328  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||  |||||||  || ||||||||||| ||||| |||    
T  30051917 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatagtatt--ttttttagccaaattttagtgatt 30052014  T
Q  329 ttc 331  Q
    |||    
T  30052015 ttc 30052017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 162 - 293
Target Start/End: Original strand, 12881715 - 12881849
Alignment:
Q  162 atgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagaggtg 257  Q
    |||||||||||||||| |||||||||||| ||| |  ||||||||||    ||||| ||||||||  ||| ||| |||||||||||||||||   |||||    
T  12881715 atgggatccaggagggtggtctcttgttcattgaagaagtcaacatgcatgggaag-ttcttatcggaatgagagctcggggtcgagttcttcttaggtg 12881813  T
Q  258 gaggagactgatgcaggagagttttattagtaattt 293  Q
    ||||||||||||| ||||| ||||  ||||||||||    
T  12881814 gaggagactgatgtaggagggtttccttagtaattt 12881849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 3541960 - 3542024
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 293  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||    
T  3541960 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattt 3542024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 331
Target Start/End: Complemental strand, 12778813 - 12778631
Alignment:
Q  151 catttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagtt 246  Q
    ||||||||| ||||||||||| |||||  ||||||||||| ||||| |||||||||||    |||| ||   ||||| ||| |||| | |||||| ||||    
T  12778813 catttcacttaatgggatccaagagggttgtctcttgttcattggaggagtcaacatgcaaaggaaact--ctatcagaatgagaatttggggtcaagtt 12778716  T
Q  247 ctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||| |||||||||||||||||||| | ||| |||||  ||||| ||   |||||||| |  ||||||| ||| ||| ||||||||    
T  12778715 cttcagaggtggaggagactgatgtaagagggttttcatagtatttctatagtatttttattttagcccaattttaataattttc 12778631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 32361106 - 32361173
Alignment:
Q  215 ttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagtttt 282  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||| ||||| ||| ||||| |||||    
T  32361106 ttcttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggagggtttt 32361173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 8047836 - 8047760
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggaggg 177  Q
    |||| |||||||| || |||| ||||||||||||||  ||  ||||||| ||||| ||||||||||||| |||||||    
T  8047836 ttcactggcataatggaaattgctatatttttcaaattaaaccatctttacattttactcaatgggatcgaggaggg 8047760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 8047704 - 8047661
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgca 272  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||    
T  8047704 agaactcggggtcaagttcttcagaggtggaggagaccgatgca 8047661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 18720020 - 18720069
Alignment:
Q  218 ttatcataataagaactcggggtcgagttctttagaggtggaggagactg 267  Q
    |||||| ||| |||| |||||||||||||||| | |||||||||||||||    
T  18720020 ttatcaaaattagaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 18726879 - 18726947
Alignment:
Q  262 agactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaattttc 331  Q
    ||||||||||||||| ||||| ||||||||||  |||| ||| |  ||||||||||||||||| ||||||    
T  18726879 agactgatgcaggagggtttttttagtaattttatagt-tttttattttagccaaatcttagtcattttc 18726947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 281
Target Start/End: Original strand, 48954 - 49127
Alignment:
Q  110 ataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg- 208  Q
    |||||||||| | ||||||||||||||||||  | |  ||| ||||||||||||||||||| || ||| | |||| ||||| | ||| |||||||||||     
T  48954 ataaaggcaactgctatatttttcaaaccaaacctt--ttgtatttcactcaatgggatccgggtgggtgttctcgtgttcataggaagagtcaacatgc 49051  T
Q  209 --ggaagct-tcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 281  Q
      ||||| | | |||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  49052 atggaagttcttttatcagaataagaactcggggttgagttcttcagaggtggaggagactgatgtaggagagttt 49127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 10349 - 10490
Alignment:
Q  170 caggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagac 265  Q
    ||||||||  ||||||||||| ||||| |||||||    |||||||||||  |||||||||| |||||| |||||| | ||| ||||||||||| |||||    
T  10349 caggagggttgtctcttgttcattggaggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagac 10448  T
Q  266 tgatgcaggagagttttattagtaatttagtagtatttatta 307  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||    
T  10449 tgatgtaggagggttttcttagtaatttattagtatttatta 10490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 277
Target Start/End: Original strand, 37396 - 37524
Alignment:
Q  152 atttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg---ggaagct-tcttatcataataagaactcggggtcgagttc 247  Q
    |||| |||||||||||||| |  ||||| ||||  |||| | ||| |||||||||||   ||||||| | |||||| |||||||| | ||| ||||||||    
T  37396 attttactcaatgggatccggttgggcgttctccggttcataggaagagtcaacatgcatggaagctcttttatcagaataagaatttggg-tcgagttc 37494  T
Q  248 tttagaggtggaggagactgatgcaggaga 277  Q
    || |||||||||||||||||||| ||||||    
T  37495 ttcagaggtggaggagactgatgtaggaga 37524  T

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Target: scaffold0024 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 144363 - 144274
Alignment:
Q  101 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttc 190  Q
    |||||||| |||||||||| |||||||||||||||| |||  ||||||||||||||| |||||||||||||| ||||  |||||||||||    
T  144363 ttcaatgggataaaggcaactactatatttttcaaatcaaaccatctttgcatttcattcaatgggatccagaagggtcgtctcttgttc 144274  T

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Target: scaffold0024; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 289
Target Start/End: Original strand, 145364 - 145555
Alignment:
Q  104 aatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggt--ctcttgttcgttggatgagt 201  Q
    ||||| |||||||||| | |||||||||||||| |||  ||| |||| |||| |||||||||||||||| || |  ||  ||||||||| ||| | ||||    
T  145364 aatgggataaaggcaactgctatatttttcaaatcaaaccatatttgtattttactcaatgggatccagaagagtagtgtctcttgttcattgaaggagt 145463  T
Q  202 caaca-tg---gga-agcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagta 289  Q
    ||||| ||   ||| | ||  |||||| ||||| |||||||| || |||||||  ||||||||||||||||||| ||||| ||||||||||||    
T  145464 caacaatgaacggacaactctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggagggttttattagta 145555  T

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Target: scaffold0110 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 45992 - 45891
Alignment:
Q  229 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtagtatttattatttagccaaatcttagtaatt 328  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||  |||||||| |  ||||||||||| ||||| |||    
T  45992 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatagtattt-tattttagccaaattttagtgatt 45894  T
Q  329 ttc 331  Q
    |||    
T  45893 ttc 45891  T

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Target: scaffold0240 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 15676 - 15741
Alignment:
Q  143 catctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg 208  Q
    ||||||| ||||||| ||||||||| |  |||||| |||||| ||||| ||||| |||||||||||    
T  15676 catcttttcatttcattcaatgggaccttggagggtggtctcctgttcattggaggagtcaacatg 15741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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