View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5435_high_4 (Length: 253)
Name: NF5435_high_4
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5435_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1390712 - 1390956
Alignment:
| Q |
1 |
tctgtttgtaatttccttttctttttaaaggaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggataagagttaa |
100 |
Q |
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| T |
1390712 |
tctgtttgtaatttccttttctttttaaaggaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggataagagttaa |
1390811 |
T |
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| Q |
101 |
ttaatgaaatggtacttttattcattctcaaattagtattctctattctttttatatcgtaaatttgattgtttcttaatcttaactgtggagcaagtag |
200 |
Q |
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| T |
1390812 |
ttaatgaaatggtacttttattcattctcaaattagtattatctattctttttatatcgtaaatttgtttgtttcttaatcttaactgtggagcaagtag |
1390911 |
T |
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| Q |
201 |
tctatgaggttatgtaatcttaaagtgctaaactgcacctatgct |
245 |
Q |
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| T |
1390912 |
tctatgaggttatgtaatcttaaagtgctaaactgcacctatgct |
1390956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 1374417 - 1374572
Alignment:
| Q |
1 |
tctgtttgtaatttccttttcttttta-aaggaaatgtc-tccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggataagagtt |
98 |
Q |
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| T |
1374417 |
tctgtttgtaatttccttttatttttttaaggaaatgtcgtactgtgttt-ttcagttttacctttcggattttaaaatgcaaatggatggataagagtt |
1374515 |
T |
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| Q |
99 |
aattaatgaaatggtacttttattcattctcaaattagtattctctattctttttat |
155 |
Q |
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| T |
1374516 |
gataaatgaaatggcacttctattgattctcaaattaatattatctattgtttttat |
1374572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 1358869 - 1358946
Alignment:
| Q |
60 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
138 |
Q |
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| T |
1358869 |
gctttcggatttc-aaatgcaaatgtatggataagagttaataaatgaaatggtacttttattcattctgaaattagta |
1358946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 1350995 - 1351072
Alignment:
| Q |
60 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
138 |
Q |
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| T |
1350995 |
gctttcggatttcaaaatgcaaatgtatggataagagttaataaatgaaatggtaccttt-ttcattctcaagttagta |
1351072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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