View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5435_high_6 (Length: 249)
Name: NF5435_high_6
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5435_high_6 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 1350657 - 1350834
Alignment:
| Q |
72 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350657 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1350756 |
T |
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| Q |
172 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
249 |
Q |
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| T |
1350757 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
1350834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 1384311 - 1384488
Alignment:
| Q |
72 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384311 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1384410 |
T |
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| Q |
172 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
249 |
Q |
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| T |
1384411 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
1384488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 1390416 - 1390593
Alignment:
| Q |
72 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
171 |
Q |
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| T |
1390416 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1390515 |
T |
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| Q |
172 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
249 |
Q |
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| T |
1390516 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
1390593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 1358563 - 1358740
Alignment:
| Q |
72 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358563 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1358662 |
T |
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| Q |
172 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
249 |
Q |
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| T |
1358663 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
1358740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 74 - 249
Target Start/End: Original strand, 1374117 - 1374292
Alignment:
| Q |
74 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
173 |
Q |
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| T |
1374117 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
1374216 |
T |
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| Q |
174 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
249 |
Q |
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| T |
1374217 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
1374292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 1394662 - 1394839
Alignment:
| Q |
72 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
171 |
Q |
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| T |
1394662 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1394761 |
T |
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| Q |
172 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcgg |
249 |
Q |
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| T |
1394762 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcgg |
1394839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 7010315 - 7010443
Alignment:
| Q |
81 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
180 |
Q |
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| T |
7010315 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
7010414 |
T |
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| Q |
181 |
ttctcaagtgttgaaggagcttgatgaag |
209 |
Q |
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| T |
7010415 |
ttctcaagtgttgaaggagcttgctgaag |
7010443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 7007237 - 7007365
Alignment:
| Q |
81 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
180 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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| T |
7007237 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
7007336 |
T |
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| Q |
181 |
ttctcaagtgttgaaggagcttgatgaag |
209 |
Q |
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| T |
7007337 |
ttctcaagtgttgaaggagcttgctgaag |
7007365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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