View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5435_high_8 (Length: 233)
Name: NF5435_high_8
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5435_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 5035945 - 5035760
Alignment:
| Q |
17 |
ggcggaagaggaagcagataaaatagcagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaat |
116 |
Q |
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| T |
5035945 |
ggcggcagaggaagcagagaaaatagcagcaacagaggaaaaccctaagaaacgaaaaa---------tgggaacagaaacagaagcaacacgttcaaat |
5035855 |
T |
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| Q |
117 |
ttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttcctcgtcctgatgggaatctaggttt |
211 |
Q |
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| T |
5035854 |
ttaccagaggatttatgggaaaacatcttcaaattcctcaacgacgaggagaacaacacattcaaacttcttcgtcctaatgggaatctaggttt |
5035760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 2526003 - 2525895
Alignment:
| Q |
103 |
caacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttcctcgtcctgatgggaa |
202 |
Q |
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| T |
2526003 |
caacacgttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacgacgaggacaacaacaccttcaaccttcttcgtcttgatgggaa |
2525904 |
T |
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| Q |
203 |
tctaggttt |
211 |
Q |
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| T |
2525903 |
tataggttt |
2525895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 2536801 - 2536654
Alignment:
| Q |
36 |
aaaatagcagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatggg |
135 |
Q |
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||||||| |||||||| | ||||||||| |||| |||||||||||||| | ||||||||||| ||||||||||| ||||||||||||| ||||||| |
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| T |
2536801 |
aaaatagaagcagcagtgaaaaaccctaggaaacgaaaaagaacaaaattttcaacagcaacac---caacacgttcatatttaccagaggagttatggg |
2536705 |
T |
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| Q |
136 |
aacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttc |
186 |
Q |
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| T |
2536704 |
aatacatcttcaaatttctcaaccacgaggacagcaacaccttcagccttc |
2536654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 2486547 - 2486430
Alignment:
| Q |
43 |
cagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatgggaacacat |
142 |
Q |
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|||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | || |||| |||||||| |||||||| | || |
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| T |
2486547 |
cagccgcagcggaaaaccataagaaacgaaaaagaacaaaaatggcaacagcaacagaagcaacatgctcgtatttcccagaggaattatgggagcgaat |
2486448 |
T |
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| Q |
143 |
cttcaaattcctcaacga |
160 |
Q |
| |
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||| |||||||||||||| |
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| T |
2486447 |
ctttaaattcctcaacga |
2486430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 2491320 - 2491241
Alignment:
| Q |
103 |
caacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaac |
182 |
Q |
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| T |
2491320 |
caacacgttcatgtttaccagagaagttatgggaacacatcctcaaattcctgaacgacgaggacaacaacatcttcaac |
2491241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 2625296 - 2625348
Alignment:
| Q |
109 |
gttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgac |
161 |
Q |
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| T |
2625296 |
gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgac |
2625348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 2519473 - 2519366
Alignment:
| Q |
55 |
aaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcct |
154 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||| || || || ||||| ||||||| ||||| |||||||| | ||| |||| ||||| |
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| T |
2519473 |
aaaaccctaagaaaccaaaaagaacaaaaatggcagcagcagcaa---catcatgttcatatttaccggaggagttatgggagcgcattgtcaagttcct |
2519377 |
T |
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| Q |
155 |
caacgacgagg |
165 |
Q |
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||||||||||| |
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| T |
2519376 |
caacgacgagg |
2519366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 2467738 - 2467679
Alignment:
| Q |
102 |
gcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgac |
161 |
Q |
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|||||| ||||| |||||||| |||| |||||||| | |||||||||||||||||||||| |
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| T |
2467738 |
gcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac |
2467679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 5101944 - 5102005
Alignment:
| Q |
102 |
gcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacga |
163 |
Q |
| |
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|||||| ||||| ||||||| || || |||||||| | |||||||||||||||||||||||| |
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| T |
5101944 |
gcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga |
5102005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 2547655 - 2547613
Alignment:
| Q |
115 |
atttaccagaggatttatgggaacacatcttcaaattcctcaa |
157 |
Q |
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|||||||||| || |||||||| |||||||||||||||||||| |
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| T |
2547655 |
atttaccagatgagttatgggagcacatcttcaaattcctcaa |
2547613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 2380052 - 2380097
Alignment:
| Q |
109 |
gttcaaatttaccagaggatttatgggaacacatcttcaaattcct |
154 |
Q |
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| T |
2380052 |
gttcaaatttaccagatgagttatgggaatacatcatcaaattcct |
2380097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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