View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5435_low_1 (Length: 691)

Name: NF5435_low_1
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5435_low_1
NF5435_low_1
[»] chr7 (7 HSPs)
chr7 (18-426)||(7632160-7632568)
chr7 (19-424)||(7638865-7639270)
chr7 (492-608)||(7632634-7632752)
chr7 (650-691)||(859412-859453)
chr7 (650-691)||(1217416-1217457)
chr7 (650-691)||(1220689-1220730)
chr7 (650-691)||(13886443-13886484)
[»] chr8 (8 HSPs)
chr8 (609-691)||(22922107-22922189)
chr8 (607-691)||(22926891-22926973)
chr8 (609-691)||(18468467-18468549)
chr8 (607-687)||(23570336-23570416)
chr8 (626-691)||(37189634-37189699)
chr8 (656-691)||(42891927-42891962)
chr8 (626-687)||(23573350-23573412)
chr8 (650-691)||(6845129-6845170)
[»] chr6 (9 HSPs)
chr6 (609-691)||(3535786-3535868)
chr6 (609-691)||(3541997-3542079)
chr6 (609-691)||(30049667-30049748)
chr6 (609-691)||(30051954-30052035)
chr6 (609-691)||(18726883-18726965)
chr6 (609-691)||(11194416-11194498)
chr6 (611-691)||(11190252-11190332)
chr6 (609-691)||(18203234-18203316)
chr6 (608-691)||(29341048-29341132)
[»] chr1 (5 HSPs)
chr1 (609-691)||(8930975-8931057)
chr1 (611-675)||(23989025-23989090)
chr1 (650-691)||(50857700-50857741)
chr1 (608-675)||(23987360-23987428)
chr1 (609-638)||(12034239-12034268)
[»] chr2 (10 HSPs)
chr2 (609-691)||(2155718-2155800)
chr2 (609-691)||(2165674-2165756)
chr2 (609-687)||(35682004-35682082)
chr2 (626-691)||(22264203-22264268)
chr2 (609-691)||(31636085-31636168)
chr2 (650-691)||(22011224-22011265)
chr2 (650-691)||(31633896-31633937)
chr2 (650-691)||(33655418-33655459)
chr2 (656-691)||(27952581-27952616)
chr2 (656-691)||(27956417-27956452)
[»] scaffold0110 (2 HSPs)
scaffold0110 (609-691)||(45873-45955)
scaffold0110 (625-691)||(46961-47027)
[»] chr5 (5 HSPs)
chr5 (609-691)||(19501206-19501288)
chr5 (612-691)||(40779043-40779122)
chr5 (617-687)||(21845150-21845221)
chr5 (617-687)||(21849231-21849302)
chr5 (617-687)||(21857145-21857216)
[»] chr3 (2 HSPs)
chr3 (609-691)||(19795019-19795101)
chr3 (642-691)||(45168549-45168598)
[»] chr4 (8 HSPs)
chr4 (627-691)||(13085348-13085412)
chr4 (609-691)||(6659586-6659668)
chr4 (626-691)||(19935275-19935340)
chr4 (608-660)||(50519523-50519576)
chr4 (267-307)||(54219756-54219796)
chr4 (650-691)||(22691099-22691140)
chr4 (650-691)||(22716454-22716495)
chr4 (650-691)||(22988722-22988763)


Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 7632160 - 7632568
Alignment:
Q  18 agaaatgagaaatcggttgaacgactcttcttagggtgtcctgttctacaagagttgaccttggataattgtcattggatgaatacaagggatatccatt 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7632160 agaaatgagaaatcggttgaacaactcttcttagggtgtcctgttctacaagagttgaccttggataattgtcattggatgaatataagggatatccatt 7632259  T
Q  118 ttgcaatttctacattaaggaagttgaccatctattctaaccgtcgtcatctagattattataatcattctgacaaatgtacaatcacaattgatgttga 217  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |    
T  7632260 ttgcaatttctacattaaggaagttgaccatctattcataccgtcgtcatctagattattataatcattccggcaaatgtacaatcacaattgatgttaa 7632359  T
Q  218 gaatcttttatctctatgttgcacaagcaatccagaagtagagtttttccttgttaaaccaacctccatagttgatgcagatatagatctagggtgttgc 317  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7632360 gaatcttttatctctatgttgccaaagcgatccagaagtagagtttttccttgttaaaccaacctccatagttgatgcagatatagatctagggtgttgc 7632459  T
Q  318 aatttaccagacaaacattattctggccaatgtgcaattgagctattgagtggattaagtagcgtaaagtctctcagcttatcagatgaatctcttcagg 417  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7632460 actttaccagacaaacattattctggccaatgtgcaattgagctattgagtggattaagtagcgtaaagtctctcagcttatcagatggatctcttcagg 7632559  T
Q  418 tatgtttga 426  Q
    |||||||||    
T  7632560 tatgtttga 7632568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 7638865 - 7639270
Alignment:
Q  19 gaaatgagaaatcggttgaacgactcttcttagggtgtcctgttctacaagagttgaccttggataattgtcattggatgaatacaagggatatccattt 118  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  7638865 gaaatgagaattcggttgaactactcttcttagggtgtcctgttctacaagagttgaccttggataattgttattggatgaatataagggatatccattt 7638964  T
Q  119 tgcaatttctacattaaggaagttgaccatctattctaaccgtcgtcatctagattattataatcattctgacaaatgtacaatcacaattgatgttgag 218  Q
    ||||||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  7638965 tgcaatttctacattaaggaagttgaccatctattctgaccattgttatctagattataataatcattccgacaaatgtacaatcacaattgatgttgag 7639064  T
Q  219 aatcttttatctctatgttgcacaagcaatccagaagtagagtttttccttgttaaaccaacctccatagttgatgcagatatagatctagggtgttgca 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||  |    
T  7639065 aatcttttatctctatgttgcacaagcaatccagaagtagagtttttccttgttaaaccaacctccatagttgatgcatatatacatcttgggtgtttta 7639164  T
Q  319 atttaccagacaaacattattctggccaatgtgcaattgagctattgagtggattaagtagcgtaaagtctctcagcttatcagatgaatctcttcaggt 418  Q
    ||  |  ||| | |||   ||| || ||| ||||||||||||||||||||||| | ||||| ||||| |||||||  |||||||| || | |||||||||    
T  7639165 atccaaaagaaacacaagtttcaggtcaacgtgcaattgagctattgagtggacttagtagtgtaaaatctctcaaattatcagaggattttcttcaggt 7639264  T
Q  419 atgttt 424  Q
    ||||||    
T  7639265 atgttt 7639270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 492 - 608
Target Start/End: Original strand, 7632634 - 7632752
Alignment:
Q  492 gtttaagataattcgaattaacaatgttgccttatttgtgnnnnnnn--atttatactcattgcattgttctttatatcataatgatcaaactatttatg 589  Q
    |||||||||||||| |||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7632634 gtttaagataattccaattaacaatgttgccttatttgtgtttttttttatttatactcattgcattgttctttatatcataatgatcaaactatttatg 7632733  T
Q  590 ctttttgtactactagtat 608  Q
    |||||||||||||||||||    
T  7632734 ctttttgtactactagtat 7632752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 691
Target Start/End: Complemental strand, 859453 - 859412
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  859453 tttagccaaatcttagtaattttctagaactttctattatta 859412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 691
Target Start/End: Complemental strand, 1217457 - 1217416
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  1217457 tttagccaaatcttagtaattttctagaactttctattatta 1217416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 691
Target Start/End: Complemental strand, 1220730 - 1220689
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  1220730 tttagccaaatcttagtaattttctagaactttctattatta 1220689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 691
Target Start/End: Complemental strand, 13886484 - 13886443
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  13886484 tttagtcaaatcttagtaattttctagaactctctattatta 13886443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 609 - 691
Target Start/End: Complemental strand, 22922189 - 22922107
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22922189 tgatgtaggagggcttccttagtaattttatagtattttattttagtcaaatcttagtgattttctagaactttctattatta 22922107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 607 - 691
Target Start/End: Complemental strand, 22926973 - 22926891
Alignment:
Q  607 attgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  22926973 attgatgtaggagggcttccttagtaattttatagtattttattttagtcaaa--ttagtgattttctagaactttctattatta 22926891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 18468467 - 18468549
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  18468467 tgatgtaggagggcttccttagtaattttatagtattttattttaaccaaatcttagtaattttctagaactttctattatta 18468549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 607 - 687
Target Start/End: Original strand, 23570336 - 23570416
Alignment:
Q  607 attgatgtaggagggcttccttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctatt 687  Q
    ||||||||||||||| ||| |||||||||||| |||||||  | |||| |||||||||||| ||||||||||||||||||||    
T  23570336 attgatgtaggagggtttc-ttagtaattttatagtatttattatttaatcaaatcttagtaattttctagaactttctatt 23570416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 691
Target Start/End: Original strand, 37189634 - 37189699
Alignment:
Q  626 cttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||   ||||||||||||||| ||||||||||| | ||| ||||||||| ||||||||    
T  37189634 cttagtaatttagtagtattttattttagccaaatcttagtaactttttagaactttatattatta 37189699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 691
Target Start/End: Complemental strand, 42891962 - 42891927
Alignment:
Q  656 caaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||| ||||||||||||||||||||||||    
T  42891962 caaatcttagtaattttctagaactttctattatta 42891927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 626 - 687
Target Start/End: Original strand, 23573350 - 23573412
Alignment:
Q  626 cttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctatt 687  Q
    ||||||||||||| |||||||  | ||||  ||||||||||| ||||||||||||||||||||    
T  23573350 cttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatt 23573412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 650 - 691
Target Start/End: Original strand, 6845129 - 6845170
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||||||||| |||||||| |||| ||||||||||    
T  6845129 tttagtcaaatcttagtaattttctaaaactctctattatta 6845170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 3535786 - 3535868
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3535786 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttaatgattttctagaactttctattatta 3535868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 3541997 - 3542079
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3541997 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttaatgattttctagaactttctattatta 3542079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 30049667 - 30049748
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  30049667 tgatgtaggagggcttccttagtaattttatagtatttt-ttttagccaaattttagtgattttctagaactttctattatta 30049748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 30051954 - 30052035
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  30051954 tgatgtaggagggcttccttagtaattttatagtatttt-ttttagccaaattttagtgattttctagaactttctattatta 30052035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 18726883 - 18726965
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||| ||  |||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  18726883 tgatgcaggagggtttttttagtaattttatagttttttattttagccaaatcttagtcattttctagaactttctattatta 18726965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 11194416 - 11194498
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||| | || |||||||||||   ||||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  11194416 tgatgtaggagagttttcttagtaatttagtagtattttattttagccaaatcttagtaattttctagaactttctagtatta 11194498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 611 - 691
Target Start/End: Original strand, 11190252 - 11190332
Alignment:
Q  611 atgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||| |||| || |||| |||||| | |||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  11190252 atgtagaagggttttcttaataatttaatagtattttattttagtcaaacctaagtaattttctagaactttctattatta 11190332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 18203234 - 18203316
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||||| ||| | |||||||||| |||||||  | ||||||||||||||||| ||||||||||||| ||||||||||    
T  18203234 tgatgtaggagggtttc-tcagtaattttatagtatttattatttagtcaaatcttagtaattttctagaactctctattatta 18203316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 691
Target Start/End: Complemental strand, 29341132 - 29341048
Alignment:
Q  608 ttgatgtaggagggcttccttagtaattttaaagtattt-tattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||| ||  ||||||||||   ||||||| | |||||| ||||||||||| |||||||| |||||||||||||||    
T  29341132 ttgatgtaggagggttttattagtaatttagtagtatttattttttagccaaatcttagtaattttctaaaactttctattatta 29341048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 8930975 - 8931057
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8930975 tgatgtaggaggacttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 8931057  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 675
Target Start/End: Original strand, 23989025 - 23989090
Alignment:
Q  611 atgtaggagggcttccttagtaattttaaagta-ttttattttagtcaaatcttagtgattttcta 675  Q
    ||||||||||| |||||||||||||| | |||| ||||||||||| ||||| ||||| ||||||||    
T  23989025 atgtaggagggtttccttagtaatttcatagtatttttattttagccaaattttagtaattttcta 23989090  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 691
Target Start/End: Complemental strand, 50857741 - 50857700
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  50857741 tttagccaaatcttagtaattttctagaactttctattatta 50857700  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 675
Target Start/End: Original strand, 23987360 - 23987428
Alignment:
Q  608 ttgatgtaggagggcttccttagtaattttaaagta-ttttattttagtcaaatcttagtgattttcta 675  Q
    |||||||||||||| |||||||||||||| | |||| |||||||||||  |||| ||||| ||||||||    
T  23987360 ttgatgtaggagggtttccttagtaatttcatagtatttttattttagctaaattttagtaattttcta 23987428  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 638
Target Start/End: Complemental strand, 12034268 - 12034239
Alignment:
Q  609 tgatgtaggagggcttccttagtaatttta 638  Q
    ||||||||||||||||||||||||||||||    
T  12034268 tgatgtaggagggcttccttagtaatttta 12034239  T

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Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 2155718 - 2155800
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2155718 tgatgtaggagggtttccttagtaattttatagtattttattttagtcaaatcttagtgattttctagaactttctattatta 2155800  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 2165674 - 2165756
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  2165674 tgatgtaggagagtttccttagtaattttatagtattttattttagtcaaatcttagtgattttttagaactttgtattatta 2165756  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 609 - 687
Target Start/End: Original strand, 35682004 - 35682082
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctatt 687  Q
    ||||| ||||||| || ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  35682004 tgatgcaggagggttttcttagtaattttatagtattttattttagccaaatcttagtaattttctagaactttctatt 35682082  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 626 - 691
Target Start/End: Original strand, 22264203 - 22264268
Alignment:
Q  626 cttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||   ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  22264203 cttagtaatttagtagtattttattttagccaaatcttagtaattttctagaactttctattatta 22264268  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 31636085 - 31636168
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||||| ||  ||||||||||   |||||||  | ||||| ||||||||||| ||||||||||||||||||||||||    
T  31636085 tgatgtaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattatta 31636168  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 691
Target Start/End: Original strand, 22011224 - 22011265
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  22011224 tttagccaaatcttagtaattttctagaactttctattatta 22011265  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 691
Target Start/End: Original strand, 31633896 - 31633937
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  31633896 tttagccaaatcttagtaattttctagaactttctattatta 31633937  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 691
Target Start/End: Original strand, 33655418 - 33655459
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  33655418 tttagccaaatcttagtaattttctagaactttctattatta 33655459  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 691
Target Start/End: Complemental strand, 27952616 - 27952581
Alignment:
Q  656 caaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||| ||||||||||||||||||||||||    
T  27952616 caaatcttagtaattttctagaactttctattatta 27952581  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 691
Target Start/End: Complemental strand, 27956452 - 27956417
Alignment:
Q  656 caaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||| ||||||||||||||||||||||||    
T  27956452 caaatcttagtaattttctagaactttctattatta 27956417  T

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Target: scaffold0110 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 609 - 691
Target Start/End: Complemental strand, 45955 - 45873
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  45955 tgatgtaggagggcttccttagtaattttatagtattttattttagccaaattttagtgattttctagaactttctattatta 45873  T

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Target: scaffold0110; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 625 - 691
Target Start/End: Complemental strand, 47027 - 46961
Alignment:
Q  625 ccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47027 ccttagtaattttatagtattttattttagtcaaattttagtgattttctagaactttctattatta 46961  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 609 - 691
Target Start/End: Complemental strand, 19501288 - 19501206
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||  ||||||||||| |||||||| |||||||||||||||    
T  19501288 tgatgtaggagggtttctttagtaattttatagtattttattttacccaaatcttagtaattttctaaaactttctattatta 19501206  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 612 - 691
Target Start/End: Complemental strand, 40779122 - 40779043
Alignment:
Q  612 tgtaggagggcttccttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||| ||| |||||||||||| |||||||  | ||||| ||||||||||| ||||||||||||||||||||||||    
T  40779122 tgtaggagggtttc-ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattatta 40779043  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 687
Target Start/End: Complemental strand, 21845221 - 21845150
Alignment:
Q  617 gagggcttccttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctatt 687  Q
    ||||| || ||||||||||||| |||||||  | ||||  ||||||||||| ||||||||||||||||||||    
T  21845221 gagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatt 21845150  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 687
Target Start/End: Complemental strand, 21849302 - 21849231
Alignment:
Q  617 gagggcttccttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctatt 687  Q
    ||||| || ||||||||||||| |||||||  | ||||  ||||||||||| ||||||||||||||||||||    
T  21849302 gagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatt 21849231  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 687
Target Start/End: Complemental strand, 21857216 - 21857145
Alignment:
Q  617 gagggcttccttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctatt 687  Q
    ||||| || ||||||||||||| |||||||  | ||||  ||||||||||| ||||||||||||||||||||    
T  21857216 gagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatt 21857145  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 19795019 - 19795101
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||||  ||| ||||||||||||  ||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  19795019 tgatgtaggaggatttctttagtaattttacggtattttattttagctaaatcttagtaattttctagaactttctattatta 19795101  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 642 - 691
Target Start/End: Complemental strand, 45168598 - 45168549
Alignment:
Q  642 tattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||||| ||||| ||||| |||||||| ||| |||||||||||    
T  45168598 tattttattttaggcaaattttagtaattttctaaaaccttctattatta 45168549  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 627 - 691
Target Start/End: Complemental strand, 13085412 - 13085348
Alignment:
Q  627 ttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||| ||||||||||||||| || |||||||| || |||||||||||||||||||||    
T  13085412 ttagtaattttatagtattttattttagccacatcttagtaatattctagaactttctattatta 13085348  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 609 - 691
Target Start/End: Complemental strand, 6659668 - 6659586
Alignment:
Q  609 tgatgtaggagggcttccttagtaattttaaagtattttat-tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||||||||||| ||| |||||||||||| |||||||  | ||||| ||||||||||| ||||||||||||||||||||||||    
T  6659668 tgatgtaggagggtttc-ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattatta 6659586  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 626 - 691
Target Start/End: Original strand, 19935275 - 19935340
Alignment:
Q  626 cttagtaattttaaagtattttattttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    |||||||||||   ||||||||||||||||||||||||| | |||||  |||||||||||||||||    
T  19935275 cttagtaatttagtagtattttattttagtcaaatcttaatcatttttcagaactttctattatta 19935340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 660
Target Start/End: Complemental strand, 50519576 - 50519523
Alignment:
Q  608 ttgatgtaggagggcttccttagtaattttaaagta-ttttattttagtcaaat 660  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||| |||||    
T  50519576 ttgatgtaggagggtttccttagtaattttatagtatttttattttagccaaat 50519523  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 54219796 - 54219756
Alignment:
Q  267 cttgttaaaccaacctccatagttgatgcagatatagatct 307  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  54219796 cttgttaaaccaacctccatagttgatgcatatattgatct 54219756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 650 - 691
Target Start/End: Original strand, 22691099 - 22691140
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||    
T  22691099 tttagccaaatcttagtaattttctagaactttgtattatta 22691140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 650 - 691
Target Start/End: Original strand, 22716454 - 22716495
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||| | ||||||||||||||||||||||||    
T  22716454 tttagccaaatcttaataattttctagaactttctattatta 22716495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 650 - 691
Target Start/End: Complemental strand, 22988763 - 22988722
Alignment:
Q  650 tttagtcaaatcttagtgattttctagaactttctattatta 691  Q
    ||||| ||||||||| | ||||||||||||||||||||||||    
T  22988763 tttagccaaatcttaataattttctagaactttctattatta 22988722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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