View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5435_low_2 (Length: 335)
Name: NF5435_low_2
Description: NF5435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5435_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 40310076 - 40310386
Alignment:
| Q |
9 |
gattattctgtacaagacaatcaataaactatgtgtatatcgagcttacaaaatcattaaagatgtagaaagagaaaagaaaaagctaatatcaaatcgt |
108 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40310076 |
gattattctgataaagacgatcaataaactatgtgtatatcgagcttacaaaatcattaaagatgtagaaagagaaaagaaaaagctaatatcaaatcat |
40310175 |
T |
|
| Q |
109 |
gattctgtacaagaaaaaattgaagcaaccgatcataaaactcaaaaggtcaatgatattgttcttgagtggctaaaagaagtggaaaaacttgtacaag |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40310176 |
gattcagtacaagaaaaaattgaagcaaccgatcataaaactcaaaaggtcaatgatattgttcttgagtggctaaaagaagtggaaaaacttgtacaag |
40310275 |
T |
|
| Q |
209 |
aggtggagaatgtgacaataataccagaaccagaatcaagatatcccaataaaatgcttaacaaattaaaggcattgaatatcaaatgtgagtttgagcc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40310276 |
aggtggagaatgtgacaataataccagaaccagaatcaagatatcccaataaaatgcttaacaaattaaaggcattgaatatcaaatgtgagtttgagcc |
40310375 |
T |
|
| Q |
309 |
atttttcaatc |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
40310376 |
atttttcaatc |
40310386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 40598671 - 40598605
Alignment:
| Q |
123 |
aaaaattgaagcaaccgatcataaaactcaaaaggtcaatgatattgttcttgagtggctaaaagaa |
189 |
Q |
| |
|
|||| |||||||||| ||||| |||||| |||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
40598671 |
aaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaa |
40598605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University