View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5436-Insertion-2 (Length: 735)
Name: NF5436-Insertion-2
Description: NF5436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5436-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 698; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 8 - 733
Target Start/End: Original strand, 49865123 - 49865848
Alignment:
| Q |
8 |
aagtaatcatctgcagggtattgtttcatgatacagttagaaaatgtaaatgaaaaaactctacttccaaaattattatagcttaccttctagtacagaa |
107 |
Q |
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| T |
49865123 |
aagtaatcatctgcagggtattgtttcatgatacagttagaaaatgtaaatgaaaaaactctacttccaaaattattatagcttaccttctagtacagaa |
49865222 |
T |
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| Q |
108 |
tcttcaggggcatctttatatgcccattgacatgctgccttaataccttcagatgcatatctaaaaaattacccaaaataattgtaactttatacagata |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49865223 |
tcttcaggggcatctttatatgcccattgacatgctgccttaataccttcagatgcatatctaaaaaattacccaaagtaattgtaactttatacagata |
49865322 |
T |
|
| Q |
208 |
aatgttggggattttctagctagatttttgaacacaaattaaactagtaacaggacatacatgtcggggcatgtggtcttgttagaactgcaagcttccc |
307 |
Q |
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| T |
49865323 |
aatgttggggattttctagctagatttttgaacacaaattaaactagtaacaggacatacatgtcggggcatgtggtcttgttagaactgcaagcttccc |
49865422 |
T |
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| Q |
308 |
atcctgctacctcatccgtccatgttttctgtatcataaaatttgagtattagtaaaaatctcgtgcaagattgaaggaatgtgcgaaaaatgtctagaa |
407 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49865423 |
atcctgctacctcatccgaccatgttttctgtatcataaaatttgagtattagtaaaaatctcgtgcaagattgaaggaatgtgcgaaaaatgtcgagaa |
49865522 |
T |
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| Q |
408 |
atagaggtgtaaaatttcatccgtgtcatcagcaaaagacttttattaaaatagacaacagaaagctgcggcatagtataccgtgatattctcctgaata |
507 |
Q |
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| T |
49865523 |
atagaggtgtaaaatttcatccgtgtcattagcaaaagacttttattaaaatagataacagaaagctgcggcatagtataccgtgatattctcctgaata |
49865622 |
T |
|
| Q |
508 |
gcactgatgtattcatctatgttagtgtcatagaatctttcttctgctgtctcaattatgttagcatcccaaacctatatgttaaaaaattagtcagtat |
607 |
Q |
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| T |
49865623 |
gcactgatgtatttatctatgttagtgtcatagaatctttcttctgctgtctcaattatgttagcatcccaaacctatatgttacaaaattagtcagtat |
49865722 |
T |
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| Q |
608 |
tgtaaatagtgaaatagatcacattgtagtagctgatgattcatgatgatgagaatatggctcactcacatggtggagattttgtttccttgtgaaccaa |
707 |
Q |
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| T |
49865723 |
tgtaaatagtgaaatagatcacattgtagtagctgatgattcatgatgatgagaatatggctcactcacatggtggagattttgtttccttgtgaaccaa |
49865822 |
T |
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| Q |
708 |
tgaacatcaattaaatttcctccctt |
733 |
Q |
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| T |
49865823 |
tgaacatcaattaaatttcctccctt |
49865848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 583
Target Start/End: Original strand, 23134879 - 23134928
Alignment:
| Q |
534 |
gtcatagaatctttcttctgctgtctcaattatgttagcatcccaaacct |
583 |
Q |
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| T |
23134879 |
gtcatagaatctttcaacttctgtctcaattatgctaacatcccaaacct |
23134928 |
T |
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