View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5436-Insertion-3 (Length: 727)
Name: NF5436-Insertion-3
Description: NF5436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5436-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 7 - 727
Target Start/End: Complemental strand, 49756487 - 49755760
Alignment:
| Q |
7 |
aaaatcaaggctaagatttgaaagagtttaatgaaataaactttattattaccaataggattaacattgccccagtaagtctcagcttgagggtgttgaa |
106 |
Q |
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| T |
49756487 |
aaaatcaaggctaagatttgaaagagtttaatgaaataaactttattattaccaataggattaacattgccccagtaagtctcagcttgagggtgttgaa |
49756388 |
T |
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| Q |
107 |
gtggatcaccgtacacctcacttgtacttgtcagcaaaaatcgtgcacccactctctttgccaatcccaacatgtttagtgtccccaccacattcgtctt |
206 |
Q |
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| T |
49756387 |
gtggatcaccgtacacctcacttgtactagtcagcaaaaatcgtgcacccactctctttgccaatcccaacatgtttagtgtccccaccacattcgtctt |
49756288 |
T |
|
| Q |
207 |
gtgccaaacaattagaatcaaggattccaaaattttaaatcaaataatcatataacatatcttttcttatcaaagtggttcaccatgattctgatgatac |
306 |
Q |
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| T |
49756287 |
gtgccaaacaattagaatcaaggattccaaaattttaaatcaaataatcatataacatat-ttttcttatcaaaatggttcaccataattctgatgatac |
49756189 |
T |
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| Q |
307 |
attgtcatgtcaaatatcataggcacagacgtgtgacacaatacttacatttattacatgtcaagaatggtagtaatttgggaaaaattatataatagaa |
406 |
Q |
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| T |
49756188 |
attgtcatgtcaaatatcataggcacagacgtgtgacacaatacttacat---ttacatgttaagaatggtagtaatttgggaaaaattatataatagaa |
49756092 |
T |
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| Q |
407 |
cgtaa------tcata-tgtgtcagacgcgtgtacttgtcgcgtgcaaaacatgctttggattagaaattttgatcatgcaatatgtaaat----aataa |
495 |
Q |
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| T |
49756091 |
aatcacatgtgtcaaattgtgtcagacgcgtgtacttgtcgcgtgcaaaacatgctttggattagaaattttgatcatgcaatatgtaaataataaataa |
49755992 |
T |
|
| Q |
496 |
ataaatttggaaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaaga |
595 |
Q |
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| T |
49755991 |
ataaatttggaaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaaga |
49755892 |
T |
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| Q |
596 |
agaataggttcaacaacatcatgtctaataagttcaaaattgggattaccaagatgatgaacaacgttctctttccttccagtaaaataattatcaatca |
695 |
Q |
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| T |
49755891 |
agaataggttcaacaacatcatgtctaataagttcaaaattgggattaccaatatgatgaacaacattctctttccttccagtaaaataattatcaatca |
49755792 |
T |
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| Q |
696 |
cgatcacattatcacctctttcaatcaaacga |
727 |
Q |
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| T |
49755791 |
cgatcacattatcacctctttcaatcaaacga |
49755760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 505 - 714
Target Start/End: Original strand, 39567287 - 39567496
Alignment:
| Q |
505 |
gaaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaagaagaataggt |
604 |
Q |
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| T |
39567287 |
gaaaaaggatatgatagttttgacggggttgaacttgtaatgaacaggagaagcaggacaagcaagatgatagatctgatcaacttcaagaagaagaggc |
39567386 |
T |
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| Q |
605 |
tcaacaacatcatgtctaataagttcaaaattgggattaccaagatgatgaacaacgttctctttccttccagtaaaataattatcaatcacgatcacat |
704 |
Q |
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| T |
39567387 |
tcaacgacgtcgtgtcgaataagctcaaatctcggattaccaaaatgatgcataacgttctcttttctaccggtgaagaaattatcaacaacaatcacac |
39567486 |
T |
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| Q |
705 |
tatcacctct |
714 |
Q |
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| T |
39567487 |
tatcccctct |
39567496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 618
Target Start/End: Complemental strand, 29127210 - 29127098
Alignment:
| Q |
506 |
aaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaagaagaataggtt |
605 |
Q |
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| T |
29127210 |
aaaaaggatatgattgtcttgatagggttatacttataatgaacaggtgaagcaggacaggcaagatgatagatctgatcaacctcaagcaaaatcggat |
29127111 |
T |
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| Q |
606 |
caacaacatcatg |
618 |
Q |
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| T |
29127110 |
caacaacatcatg |
29127098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 208
Target Start/End: Original strand, 39567038 - 39567189
Alignment:
| Q |
57 |
accaataggattaacattgccccagtaagtctcagcttgagggtgttgaagtggatcaccgtacacctcacttgtacttgtcagcaaaaatcgtgcaccc |
156 |
Q |
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| T |
39567038 |
accaattggattaacgtttccccagtaagtctccttctgaggatgctccagaggatcaccataaacctcacttgtacttgttagcaagaatctagctcca |
39567137 |
T |
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| Q |
157 |
actctctttgccaatcccaacatgtttagtgtccccaccacattcgtcttgt |
208 |
Q |
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| T |
39567138 |
actcttttcgccaatccaagcatgttcaatgttccgaccacattcgtcttgt |
39567189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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