View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5436_low_4 (Length: 267)
Name: NF5436_low_4
Description: NF5436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5436_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 37733038 - 37733167
Alignment:
| Q |
49 |
taaccacattcaaagtgaactatagccaactaatttggttaagccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagacatt |
148 |
Q |
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| T |
37733038 |
taaccacattcaaagtgaactatagccaacgaatttggttaagccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagacatt |
37733137 |
T |
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| Q |
149 |
ttcactgatgttttaccaagtattgctcct |
178 |
Q |
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| T |
37733138 |
ttcactgatgttttaccaagtattgctcct |
37733167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 37751970 - 37752035
Alignment:
| Q |
80 |
aatttggttaagccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagac |
145 |
Q |
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| T |
37751970 |
aatttggtgaaaccaaaagtaatggccatagccatccaacctccaataagaactctaacacaagac |
37752035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 37742736 - 37742683
Alignment:
| Q |
92 |
ccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagac |
145 |
Q |
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| T |
37742736 |
ccaaaagtaatggccatagccatccaacctccaataagaactctaacacaagac |
37742683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 37749806 - 37749753
Alignment:
| Q |
92 |
ccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagac |
145 |
Q |
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| T |
37749806 |
ccaaaagtaatggccatagccatccaacctccaataagaactctaacacaagac |
37749753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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