View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5436_low_5 (Length: 265)
Name: NF5436_low_5
Description: NF5436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5436_low_5 |
 | |
|
| [»] scaffold0121 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0121 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 35286 - 35516
Alignment:
| Q |
13 |
aatatgagaggaggagtatatggacccc-cagattctattgaagttctagagtcattccttcgtcacttgtgttgtttgaaaatcaataaccaactcaat |
111 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35286 |
aatatgagagaaggaggatatggaccccccagattctattgaagttctagagtcattcctttgtcacttgtgttgtttgaaaatcaataaccaactcaat |
35385 |
T |
|
| Q |
112 |
ttctcatctatgccctcttttgaaagtcaaacttttgtttacgagtctaatcatatatctgttatcattttgaactatatagatggcagaggaaagagca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
35386 |
ttctcatctatgccctcttttgaaagtcaaacttttgtttacgagtctaatcatatctctgttatcattttgaactat----atggcagaggaaagagta |
35481 |
T |
|
| Q |
212 |
attataagtttgttgtctaaaatataggcaccgtt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35482 |
attataagtttgttgtctaaaatataggcaccgtt |
35516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 49045869 - 49046037
Alignment:
| Q |
79 |
ttgtgttgtttgaaaatcaataaccaactcaatttctcatctatgccctcttttgaaagtcaaacttttgtttacgagtctaatcatatatctgttatca |
178 |
Q |
| |
|
|||||||| |||||||| |||||||| || ||||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49045869 |
ttgtgttgcatgaaaatccataaccaattctatttctcttctatgccctctcttgaaactcaaacttttgtttacgggtctaatcatatatctgttatca |
49045968 |
T |
|
| Q |
179 |
ttttgaactatatagatggcagaggaaagagcaattataagtttgttgtctaaaatataggcaccgttt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
49045969 |
ttttgaactatatagatggcagaggaaagggtagttataagtttgttgcctaaagtatatgcaccgttt |
49046037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 77 - 246
Target Start/End: Original strand, 22650913 - 22651082
Alignment:
| Q |
77 |
acttgtgttgtttgaaaatcaataaccaactcaatttctcatctatgccctcttttgaaagtcaaacttttgtttacgagtctaatcatatatctgttat |
176 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||||| |||||| ||||||| |||||| | |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
22650913 |
acttgtgttgtatgaaaatccataaccaattcaatttcccatctacgccctctcttgaaactaaaacttttatttacgagtctaatcatatctctgttat |
22651012 |
T |
|
| Q |
177 |
cattttgaactatatagatggcagaggaaagagcaattataagtttgttgtctaaaatataggcaccgtt |
246 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| | |||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
22651013 |
cattttgaactatatagatgacagagtaaagggtaattataagtttgttgcctaaagtatacacaccgtt |
22651082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 9760984 - 9760853
Alignment:
| Q |
77 |
acttgtgttgtttgaaaatcaataaccaactcaatttctcatctatgccctcttttgaaagtcaaacttttgtttacgagtctaatcatatatctgttat |
176 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||| |||| |||||||||| |||||| |||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
9760984 |
acttgtgttgtatgaaaatccataaccaattcaatttatcatatatgccctctcttgaaactcaaacttttgtttacgaatctaatcatatctccgttat |
9760885 |
T |
|
| Q |
177 |
cattttgaactata-tagatggcagaggaaag |
207 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||| |
|
|
| T |
9760884 |
caatttgaactatattagatggcagaggaaag |
9760853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University