View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5437-Insertion-2 (Length: 968)
Name: NF5437-Insertion-2
Description: NF5437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5437-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 8e-76; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 2838778 - 2838603
Alignment:
| Q |
8 |
acatggtatgatatcacattaaatttaatctacaggaatttcatttcataactgtatctgcaaagattgagaatattaatgattcgttcaatgctacatg |
107 |
Q |
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| T |
2838778 |
acatggtatgatatcacattaaa---aatctacaggaatttcatttcataactgtatctgcaaagattgagaatattaatgattcgttcaatgctacatg |
2838682 |
T |
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| Q |
108 |
ctatactcgttgagaagatatcgtgatttgtcaggatcgatcgcctaattgggataacgttaataatgaaagtggaaat |
186 |
Q |
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| T |
2838681 |
ctatactcgttgagaagagatcttgatttgtcaggatcgatcggctaatttggatgacgttaataatgaaagtggaaat |
2838603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 280 - 460
Target Start/End: Complemental strand, 2838219 - 2838039
Alignment:
| Q |
280 |
gatacatggaatgcagggtgcatcctagcttcaactggaagttgctgatggaaagccactgctccaatcttcttggtgaccaagaaatgaccatagtacc |
379 |
Q |
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| T |
2838219 |
gatacgtggaatgcagggtgtatcctagcatcaactggaagttgctggtggaaagccaccgctccaattttcttggtgaccaagaaacgaccatagtacc |
2838120 |
T |
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| Q |
380 |
tagtgtatgtgcatccacgtttaaattggctgaacgcacgtttcacgagaagcttgtagttgtagcttccgcattggtacg |
460 |
Q |
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| T |
2838119 |
aaatgtacgtgcatccgcgtttaaattggctgaacgcacatttgactagaagcttgtagttgtagcttctgcattggtacg |
2838039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 280 - 464
Target Start/End: Original strand, 2375189 - 2375374
Alignment:
| Q |
280 |
gatacatggaatgcagggtgcatcctagcttcaactggaagttgctgatggaaagccactgctccaatcttcttggtgaccaagaaatgaccatagtac- |
378 |
Q |
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| T |
2375189 |
gatacgtggaatgcagggtgtatcctagctttaactggaagttgctggtggaaagccactgctccagtcttcttggtgaccaagaaacaaccatagtact |
2375288 |
T |
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| Q |
379 |
ctagtgtatgtgcatccacgtttaaattggctgaacgcacgtttcacgagaagcttgtagttgtagcttccgcattggtacgcgat |
464 |
Q |
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| T |
2375289 |
ttagtgtatgtgcatccgcgtttaaattggctgaacacatgtttgactagaagctttttgatgtagcttttgcattggtacgcgat |
2375374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 280 - 464
Target Start/End: Complemental strand, 2380882 - 2380697
Alignment:
| Q |
280 |
gatacatggaatgcagggtgcatcctagcttcaactggaagttgctgatggaaagccactgctccaatcttcttggtgaccaagaaatgaccatagtac- |
378 |
Q |
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| T |
2380882 |
gatacgtggaatgcagggtgtatcctagctttaactggaagttgctggtggaaagccactgctccagtcttcttggtgaccaagaaacaaccatagtact |
2380783 |
T |
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| Q |
379 |
ctagtgtatgtgcatccacgtttaaattggctgaacgcacgtttcacgagaagcttgtagttgtagcttccgcattggtacgcgat |
464 |
Q |
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| T |
2380782 |
ttagtgtatgtgcatccgcgtttaaattggctgaacacatgtttgactagaagctttttgatgtagcttttgcattggtacgcgat |
2380697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 2374574 - 2374756
Alignment:
| Q |
8 |
acatggtatgatatcacattaaatttaatctacaggaatttcatttcataactgtatctgcaaagattgagaatattaatgattcgttcaatgctacatg |
107 |
Q |
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| T |
2374574 |
acatggtatgatatcactttaaatttaatctacatgc---------cataactgtatccgtaaagactgagaatattaatgattcattcaatgctacatg |
2374664 |
T |
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| Q |
108 |
ctatactcgttgagaagatatcgtgatttgtcaggatcgatcgcctaattgggataacgttaata---atgaaagtggaaatggtcaatttt |
196 |
Q |
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| T |
2374665 |
ctatacccgttgagaagagatcgtactttgtcacgatcgattggctaattgggataacgttaataaccatgaaagtggaaatggtctatttt |
2374756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 2381497 - 2381315
Alignment:
| Q |
8 |
acatggtatgatatcacattaaatttaatctacaggaatttcatttcataactgtatctgcaaagattgagaatattaatgattcgttcaatgctacatg |
107 |
Q |
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| T |
2381497 |
acatggtatgatatcactttaaatttaatctacatgc---------cataactgtatccgtaaagactgagaatattaatgattcattcaatgctacatg |
2381407 |
T |
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| Q |
108 |
ctatactcgttgagaagatatcgtgatttgtcaggatcgatcgcctaattgggataacgttaata---atgaaagtggaaatggtcaatttt |
196 |
Q |
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| T |
2381406 |
ctatacccgttgagaagagatcgtactttgtcacgatcgattggctaattgggataacgttaataaccatgaaagtggaaatggtctatttt |
2381315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 1710484 - 1710528
Alignment:
| Q |
61 |
gtatctgcaaagattgagaatattaatgattcgttcaatgctaca |
105 |
Q |
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| T |
1710484 |
gtatctgcaaagattgagaaaattaatgattcggtgaatgctaca |
1710528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 9e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 1525322 - 1525134
Alignment:
| Q |
8 |
acatggtatgatatcacattaaatttaatctacaggaatttcatttcataactgtatctgcaaagattgagaatattaatgattcgttcaatgctacatg |
107 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||||||| ||| | |||| ||||||||| |
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| T |
1525322 |
acatggtatgatatcacattaaatttaatctacagcaatttcatgccagaactgtctctgcaaagattgaggatattaacgatccattcagtgctacatg |
1525223 |
T |
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| Q |
108 |
ctatactcgttgagaagatatcgtgatttgtcaggatcgatcgcctaattgggataacgttaataatgaaagtggaaatggtcaatttt |
196 |
Q |
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| T |
1525222 |
ctatgccctttgagaagagatcatgatttgtaaatatccgtctgctcattgggataacgttaataatgaatgtggaaatggtcaatttt |
1525134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 1524232 - 1524169
Alignment:
| Q |
215 |
cctgtggtaatctaaatcgctgccatcgttctgttggatatatgcaccaaccttgattttcgtgtg |
280 |
Q |
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| T |
1524232 |
cctgaggtaatctaagtcgctgccatcgttatgttgg--atatgctccaaccttgattttcctgtg |
1524169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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