View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5437-Insertion-3 (Length: 790)
Name: NF5437-Insertion-3
Description: NF5437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5437-Insertion-3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 8 - 693
Target Start/End: Complemental strand, 11437883 - 11437198
Alignment:
| Q |
8 |
atattttagctaatagtaaaccaacaacaagtattttgttttcctttcttcatcttcttcccttctctcctttattatcttcaacagaatcttcatacca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
11437883 |
atattttagctaatagtaaaccaacaacaagtattttgttttcctttcttcatcttcttcccttctctcctttatcatcttcaacataatcttcatacca |
11437784 |
T |
|
| Q |
108 |
acttacaaaaagagcaagatacaagcccagaaaaaactctcatcttcatcaacttcatgaatgttcatcaatcaaaccaataataaacccagaaaaattt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11437783 |
acttacaaaaagagcaagatacaagcccagaaaaaactctcatcttcatcaacttcatgaatgttcatcaatcaaaccaataataaacccagaaaaattt |
11437684 |
T |
|
| Q |
208 |
gttaaaagaaatcaaaatgaacccatctcgtatcatggcctctctctctcgtctcctatcatctcccatggcatatcccgaaacaaatgtacctgaaaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11437683 |
gttaaaagaaatcaaaatgaacccatctcgtatcatggcctctc--tctcgtctcctatcatctcccatggcatatcccgaaacaaatgtacctgaaaga |
11437586 |
T |
|
| Q |
308 |
gccattcgataaggttac----atcagtagcaataccagctacaatggcagcaacttcattgtttctgattgtaagttagaaaatcttcatatgattcgt |
403 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11437585 |
gccattcgataaggttacattgatcagtagcaataccagctacaatggcagcaacttcattgtttctgattgtaagttagaaaatcttcatatgattcgt |
11437486 |
T |
|
| Q |
404 |
attcctctttgggacactgttctattccttttgttcaatgaggcttcttcaatattaaccatgtcttttctttacttttttgtttagtgccttaataaat |
503 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11437485 |
attcctctttgggacactgttctgttccttttgttcaatgaggcttcttcaatatgaaccatgtcttttctttacttttttgtttagtgccttaataaat |
11437386 |
T |
|
| Q |
504 |
atgcttaagacgtgaatgaatggttccatgtgagttatgactaannnnnnnnnnnnnnagagattatcactgaatgttcaaattcgtgttcatatgtaca |
603 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11437385 |
atgcttaagacgtgaatgaatagttccatgtgagttatgactgattttttcattttttagagattatcactgaatgttcaaattcgtgttcatatgtac- |
11437287 |
T |
|
| Q |
604 |
attagcatgttctatacaaccnnnnnnnncttcactttatgttggtaggtattttgattcgtcatttggcatgctagaaagaccactgaa |
693 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
11437286 |
-ttagcatgttctatacaaccttttttttcttcactttatgttggtaggtattttgattagtcatttggcatggtagaaagaccactgaa |
11437198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 711 - 790
Target Start/End: Complemental strand, 11437098 - 11437019
Alignment:
| Q |
711 |
tgatgtttttggaggcaaactagattatgcaataggagatgctttatgctacattaagtttaaactattactttttccac |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
11437098 |
tgatgtttttggaggcaaactagattatgcaataggagatgctttatgctacattaagtttagactattactttttccac |
11437019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 284
Target Start/End: Complemental strand, 45422033 - 45421904
Alignment:
| Q |
150 |
tcttcatcaacttcatgaatgttcatcaatcaaaccaataataaacccagaaaaatttgttaaaagaaatcaaaatgaacccatctcgtatcatggcctc |
249 |
Q |
| |
|
||||||||||||| || ||| |||||||||||||| | ||||||||||||||||||| || ||| ||||||||| ||| ||| | |||||||| |
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|
| T |
45422033 |
tcttcatcaactttataaatattcatcaatcaaactcaaaataaacccagaaaaatttatttaaaaaaatcaaaaggaa-----ctcctctcatggccct |
45421939 |
T |
|
| Q |
250 |
tctctctcgtctcctatcatctcccatggcatatc |
284 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |||| |
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|
| T |
45421938 |
tctctcccgtcttctctcatctcccatggcctatc |
45421904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 19826107 - 19826384
Alignment:
| Q |
8 |
atattttagctaatagtaaaccaacaacaagtattttgttttcctttcttcatcttcttcccttctctcctttattatcttcaacagaatcttcatacca |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||| | |||||||||||| ||||||||||||| ||||| || |||||||||| ||||||||| ||| |
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|
| T |
19826107 |
atattttagctaatagtaaaccaccaacaactaatttttgttcctttcttcaacttcttcccttctatccttcatcatcttcaacataatcttcatccca |
19826206 |
T |
|
| Q |
108 |
acttacaaaaagagcaag---atacaagcccagaaaaaactctcatcttcatcaacttcatgaatgttcatcaatcaaaccaataataaacccagaaaaa |
204 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
19826207 |
actta-aaaaatagcaaggcacaacaagcccagaaaaaactatcatcttca-caacttcatgcatgttcatcaatcaaaccaataataaatccagaaaaa |
19826304 |
T |
|
| Q |
205 |
tttgttaaaagaaatcaaaatgaacccatctcgtatcatggcctctct------ctctcgtctcctatcatctcccatgg |
278 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| |||||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
19826305 |
tttattaaaagaaatcaaaatgaactcatctcatatcatagtctctctctctaactctcgtctcctatcatctcccatgg |
19826384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 32142001 - 32142187
Alignment:
| Q |
8 |
atattttagctaatagtaaaccaacaacaagta--ttttgttttcctttcttcatcttcttcccttctctcctttattatcttcaacagaatcttcatac |
105 |
Q |
| |
|
|||||||||||||||| |||||| |||||| || |||| |||||||||||||||||||||| ||||| ||||| || |||||||| | |||| |||| | |
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|
| T |
32142001 |
atattttagctaatagaaaaccaccaacaactaattttttttttcctttcttcatcttcttcgcttctatccttcatgatcttcaatataatcctcatcc |
32142100 |
T |
|
| Q |
106 |
caacttacaaaaagagcaagatacaagcccagaaaaaactctcatcttcatcaacttcatgaatgttcatcaatcaaaccaataataa |
193 |
Q |
| |
|
||||||| ||||| || |||| ||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
32142101 |
caacttaaaaaaatagtaagacacaagcccaaaaaaaactcccatcttca-caacttcatacatgttcatcaatcaaaccaataataa |
32142187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 278 - 393
Target Start/End: Complemental strand, 36095179 - 36095064
Alignment:
| Q |
278 |
gcatatcccgaaacaaatgtacctgaaagagccattcgataaggttacatcagtagcaataccagctacaatggcagcaacttcattgtttctgattgta |
377 |
Q |
| |
|
||||||||||||||| | ||| |||||| |||||| |||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
36095179 |
gcatatcccgaaacacacatacttgaaagggccatttgatagggttacatcagtagcaataccagctgctttggcagcaacttcattgtttctgattgta |
36095080 |
T |
|
| Q |
378 |
agttagaaaatcttca |
393 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
36095079 |
agttagaaaatcttca |
36095064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 9262642 - 9262564
Alignment:
| Q |
32 |
caacaagtattttgttttcctttcttcatcttc-ttcccttctctcctttattatcttcaacagaatcttcataccaac |
109 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| |||||| ||||||| | || ||||||| ||||||||||||||| |
|
|
| T |
9262642 |
caacaactatttttttttcctttcttcatcttctttccctcttctccttcgtcattttcaacataatcttcataccaac |
9262564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 33850508 - 33850607
Alignment:
| Q |
8 |
atattttagctaatagtaaaccaacaacaagtattttgttttcctttcttcatcttcttcccttctctcctttattatcttcaacagaatcttcatacca |
107 |
Q |
| |
|
|||||||| |||||| |||||||||||||| | ||| ||||| | ||||||||||||||| | ||||||| |||||||||||| ||||||||||||| |
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|
| T |
33850508 |
atattttatctaataataaaccaacaacaacttattttttttcttgtcttcatcttcttccttcctctcct---ttatcttcaacataatcttcatacca |
33850604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 33943470 - 33943371
Alignment:
| Q |
8 |
atattttagctaatagtaaaccaacaacaagtattttgttttcctttcttcatcttcttcccttctctcctttattatcttcaacagaatcttcatacca |
107 |
Q |
| |
|
|||||||| |||||| |||||||||||||| | ||| ||||| | ||||||||||||||| | ||||||| |||||||||||| ||||||||||||| |
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|
| T |
33943470 |
atattttatctaataataaaccaacaacaacttattttttttcttgtcttcatcttcttccttcctctcct---ttatcttcaacataatcttcatacca |
33943374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 22746799 - 22746854
Alignment:
| Q |
150 |
tcttcatcaacttcatgaatgttcatcaatcaaaccaataataaacccagaaaaatt |
206 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| | |||||||||||||||||| |
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|
| T |
22746799 |
tcttcatcaacttcat-aacattcatcaatcaaacccaaaataaacccagaaaaatt |
22746854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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