View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5437-Insertion-4 (Length: 543)
Name: NF5437-Insertion-4
Description: NF5437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5437-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 538
Target Start/End: Original strand, 215189 - 215718
Alignment:
| Q |
8 |
tatgtgttaagaataatctcattctgcttacaaaattacgttactacataaattttgcagcaagttagcttagaaactatagagaaggatgatgataaat |
107 |
Q |
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| T |
215189 |
tatgtgttaagaataatctcattctgcttacaaaattacgttactacataaattttgcagcaagttagcttagaaactatagagagggatgatgataaat |
215288 |
T |
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| Q |
108 |
caaactgtgtagccaatcttgcaacaaatcacacgggaaagcgactcctgtaactttaaacaacccttggataatatggtttctaaatcaaatttgactg |
207 |
Q |
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| T |
215289 |
caaactgtgtagccaatcttgcaacaaatcacacgggaaagcgactcctgtaactttaaacaacccttggataatatggtttttaaatcaaatttgactg |
215388 |
T |
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| Q |
208 |
ttaacactctgccaaagcacagcatttctgctaatacttgccatttttcaaatgtgtatccaaacacagttaatctctcacattccaaaggcaattctaa |
307 |
Q |
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| T |
215389 |
ttaacactctgccaaagcacagcatttctgctaatacttgccatttttcaaatgtgtatccaaacacagttaatctctcacattccaaaggcaattctaa |
215488 |
T |
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| Q |
308 |
cgcatctttatcaacattaacaactgcagctgcaaatagccgcaaacatgtttctttaattttccaaacataggctaaatcacaagtctaagaaccaaca |
407 |
Q |
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| T |
215489 |
cgcgtctttatcaacactaacaactgcagctgcaaatagccgcaaacgtgtttctttaactttccaaacata-gctaaatcacaagtctaagaaccaaca |
215587 |
T |
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| Q |
408 |
agagtaatccataatgatgtacgttacactaagaattatacaaaaagacagcctagaaactcacaaatattacagaacaataatacatttgatatagcag |
507 |
Q |
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| T |
215588 |
agagtaatccataatgatgtacgttacactaagaattatacaaaaagacagcctagaaactcacaaatattacagaacaataatacatttgatatagcag |
215687 |
T |
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| Q |
508 |
aaaagccttgctatgccctgtcatactcaca |
538 |
Q |
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| T |
215688 |
aaaagccttgctatgccctgtcatactcaca |
215718 |
T |
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