View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5437-Insertion-5 (Length: 541)
Name: NF5437-Insertion-5
Description: NF5437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5437-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Original strand, 13217393 - 13217926
Alignment:
| Q |
8 |
tacacgtccataaagctcctcacagtcaagtttgtaccttacctgtgtaaagaatggaaacaaatagaattagtagcaactcaacttttcatcaaacaca |
107 |
Q |
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| T |
13217393 |
tacaagtccataaagctcctcacagtcaagtttgtaccttacctgtgtaaagaatggaaacaaatagaatcagtagcaactcaacttttcatcaaacaaa |
13217492 |
T |
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| Q |
108 |
cagaaatgaataataagaaataatgaattttctctagactaaagcgtaccgggttgagcctgtgacagtgccaaatccattcacagtcgagaggaactac |
207 |
Q |
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| T |
13217493 |
cagaaatgaacagtaagaaataatgtattttctctagactaaagcgtaccgggttgagcctgtgacagtgccaaatccattcacagtcgagaggaactac |
13217592 |
T |
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| Q |
208 |
caaaggaccttcaaaaatacgagattctgaatgtttggcaagcaagggaagccaacaagcattgtacctaatcatacatatcaaaatcctccatccaatc |
307 |
Q |
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| T |
13217593 |
caaaggaccttcaaaaatacgagattctgaatgtttggcaagcaagggaagccaacaagcattgtacctaatcatacacatcaaaatcctccatccaatc |
13217692 |
T |
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| Q |
308 |
atacctcaaggctaggctataccttccaaactatcattggatggtaatttaaaactgagatgatcataaagaaacatgactaaaacaaagtaacatagtt |
407 |
Q |
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| T |
13217693 |
atacctcaaggctaggctataccttccaaactatcattggatggtaatttaaaactgagatgatcataaagaaacatgactaaaacaaagtaacacagtt |
13217792 |
T |
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| Q |
408 |
cttgatctaataccaaaaatatatactatttgaaagaatattacctatagatagctctatcaagagcaggaccatcataaagatgacgatttctatcaac |
507 |
Q |
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| T |
13217793 |
cttgatctaataccaaaaatatatactatttgaaagaatattacctatagatagctctatcaagagcaggaccatcataaagatgacgatttctatcaac |
13217892 |
T |
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| Q |
508 |
agctgcaagaaactgaaactgttttttcgccaca |
541 |
Q |
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| T |
13217893 |
agctgcaagaaactgaagctgttttttcgccaca |
13217926 |
T |
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