View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5437_high_5 (Length: 250)
Name: NF5437_high_5
Description: NF5437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5437_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 2839207 - 2839426
Alignment:
| Q |
18 |
tgaatacaaaatagttataaatccttatgaaggtagtattttgggaaaacagaaaaacaacccacagaacagagagataacataacaatcttctcaannn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2839207 |
tgaatacaaaatagttataaatccttatgaaggtagtattttgggaaaacagaaaaacaacccacggaacagagagataacataacaatcttctcaa--a |
2839304 |
T |
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| Q |
118 |
nnnnnnnnngcacacaaaggagaacatactaatacannnnnnnnnnnnnnnnncatgaaaaacataatagtgcaaatctagtccttctctaattcttgaa |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839305 |
gagagagaggcacacaaaggagaacatactaataca---attattattattatcatgaaaaacataatagtgcaaatctagtccttctctaattcttgaa |
2839401 |
T |
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| Q |
218 |
atattcattaatcctttgcctttgc |
242 |
Q |
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|||||||||| |||||||||||||| |
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| T |
2839402 |
atattcattactcctttgcctttgc |
2839426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 53 - 242
Target Start/End: Complemental strand, 2374113 - 2373923
Alignment:
| Q |
53 |
gtattttgggaaaacagaaaaacaacccacagaacagagagataacataacaatcttctcaannnnnnnnnnnn----gcacacaaaggagaacatacta |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2374113 |
gtattttgggaaaacagaaaaacaacccacagaacagagagataacataacaatcttctcaaagagagagagagagaggcacacaaaggagaacatacta |
2374014 |
T |
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| Q |
149 |
atacannnnnnnnnnnnnnnnncatgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattaatcctttgcctttgc |
242 |
Q |
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| T |
2374013 |
atacaattattattattat---catgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattaatcctttgcctttgc |
2373923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 53 - 242
Target Start/End: Original strand, 2381958 - 2382148
Alignment:
| Q |
53 |
gtattttgggaaaacagaaaaacaacccacagaacagagagataacataacaatcttctcaannnnnnnnnnnn----gcacacaaaggagaacatacta |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2381958 |
gtattttgggaaaacagaaaaacaacccacagaacagagagataacataacaatcttctcaaagagagagagagagaggcacacaaaggagaacatacta |
2382057 |
T |
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| Q |
149 |
atacannnnnnnnnnnnnnnnncatgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattaatcctttgcctttgc |
242 |
Q |
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| T |
2382058 |
atacaattattattattat---catgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattaatcctttgcctttgc |
2382148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 1525696 - 1525768
Alignment:
| Q |
18 |
tgaatacaaaatagttataaatccttatgaaggtagtattttgggaaaacagaaaaacaacccacagaacagaga |
92 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
1525696 |
tgaatccaaaatagttataaatccttatgaaggtagtattttgggaaaacag--aaacaacccagagaacagaga |
1525768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 1525868 - 1525897
Alignment:
| Q |
196 |
tagtccttctctaattcttgaaatattcat |
225 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1525868 |
tagtccttctctaattcttgaaatattcat |
1525897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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