View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5437_low_1 (Length: 406)
Name: NF5437_low_1
Description: NF5437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5437_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Original strand, 13217019 - 13217396
Alignment:
| Q |
11 |
caaaggtatggaaaataaagatcacaggcctggtaaaccttggtgacataactaattctaatagaatatcaggcattgagtataacaattaacaaacaat |
110 |
Q |
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| T |
13217019 |
caaaggtatggaaaataaagatcacaggcctggtaaaccttggtgacataactaattctaatagaatatcaggcattgagtataacaattaacaaacaat |
13217118 |
T |
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| Q |
111 |
aatttcaatggttgtactacatgaaatgggacaactggacaaatactattctctccattacctggtaaaagaatgggctctgcctcttaacagctgaaat |
210 |
Q |
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| T |
13217119 |
aatttcaatggttgtactacatgaaatgggacaactggacaaataccattctctccattacctggtaaaagaatgggctctgcctcttaacagctgaaat |
13217218 |
T |
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| Q |
211 |
cagatcatatttagtgtattttgcaagactagtggtccttttagagatatcctcaggatcaaggttaatcaaatcagaattgtatggctcattgggatac |
310 |
Q |
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| T |
13217219 |
cagatcatatttagtgtattttgcaagactagtggtccttttagagatatcctcaggatcaaggttaatcaaatcagaattgtatggctcatcgggatac |
13217318 |
T |
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| Q |
311 |
aatttgttccagatttcttcagtttgcctgccacaaattccttcaacggtagagacaacatcaaagttgtcaagtaca |
388 |
Q |
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| T |
13217319 |
aatttgttccagatttcttcagtttgcctgccacaaattccttcaacggtagagacaacatcaaagttgtcaagtaca |
13217396 |
T |
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