View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5437_low_2 (Length: 282)
Name: NF5437_low_2
Description: NF5437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5437_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 2839039 - 2838774
Alignment:
| Q |
1 |
ttgcatggaggactctgaggtttttcgttcatacatttctattgattgatatatagttctcatggagacaaaattttaacttgaattctgttttcttgct |
100 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839039 |
ttgcatggaggactgtgaggtttttcgttcatacgtttctattgattgatatatagttctcatggagacaaaattttaacttgaattctgttttcttgct |
2838940 |
T |
|
| Q |
101 |
gtaggttattgaaacaacaaatggactcataacaaacttttcagaatttgtttgaattgactttttaggtctgcacttactttaaaagttattctatgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2838939 |
gtaggttattgaaacaacaaatggactcataacaaacttttcagaatttgtttgaattgactttttaggtctgcacttactttaaaagttattgtatgca |
2838840 |
T |
|
| Q |
201 |
atgtgatgttgattttagtcacagatgaagattcttaactctatgcctgtggtcttcacatacatg |
266 |
Q |
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||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838839 |
atgtgatgtcgattttagccgcagatgaagattcttaactctatgcctgtggtcttcacatacatg |
2838774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 2374309 - 2374578
Alignment:
| Q |
1 |
ttgcatggaggactctgaggtttttcgttcatacatttctattgattgatatatagttctcatggagacaaaattttaacttgaattctgttttcttgct |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
2374309 |
ttgcatggaggactctgaggtttttccttcatacatttctattgattgatatatagttctcatggaggcaaaattttaacttgaattctgttttcatgct |
2374408 |
T |
|
| Q |
101 |
gtaggttattgaaacaacaaatgg----actcataacaaacttttcagaatttgtttgaattgactttttaggtctgcacttactttaaaagttattcta |
196 |
Q |
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| T |
2374409 |
gtaggttattgaaacaacaaatggatggactcataacaaacttttcagaatttctttgaattgactttttaggtctgcacttacttgaaaagttattcta |
2374508 |
T |
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| Q |
197 |
tgcaatgtgatgttgattttagtcacagatgaagattcttaactctatgcctgtggtcttcacatacatg |
266 |
Q |
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|||||| |||||| ||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
2374509 |
tgcaatatgatgtggattttactcgcagatgaagattcttaactctatgcttgtggccttcacatacatg |
2374578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 2381762 - 2381493
Alignment:
| Q |
1 |
ttgcatggaggactctgaggtttttcgttcatacatttctattgattgatatatagttctcatggagacaaaattttaacttgaattctgttttcttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
2381762 |
ttgcatggaggactctgaggtttttccttcatacatttctattgattgatatatagttctcatggaggcaaaattttaacttgaattctgttttcatgct |
2381663 |
T |
|
| Q |
101 |
gtaggttattgaaacaacaaatgga----ctcataacaaacttttcagaatttgtttgaattgactttttaggtctgcacttactttaaaagttattcta |
196 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2381662 |
gtaggttattgaaacaacaaatggatggactcataacaaacttttcagaatttctttgaattgactttttaggtctgcacttacttgaaaagttattcta |
2381563 |
T |
|
| Q |
197 |
tgcaatgtgatgttgattttagtcacagatgaagattcttaactctatgcctgtggtcttcacatacatg |
266 |
Q |
| |
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|||||| |||||| ||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
2381562 |
tgcaatatgatgtggattttactcgcagatgaagattcttaactctatgcttgtggccttcacatacatg |
2381493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 1376203 - 1376111
Alignment:
| Q |
151 |
tttgaattgactttttaggtctgcacttactttaaaagttattctatgcaatgtgatgttgattttagtcacagatgaagattcttaactcta |
243 |
Q |
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|||||||||||||| |||| ||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |
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| T |
1376203 |
tttgaattgactttgtaggaatgcacttctttgaaaagttattctatgcaatgtgatagggattttagttgcagatgaagattcttgactcta |
1376111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 1525584 - 1525318
Alignment:
| Q |
14 |
tctgaggtttttcgttcatacatttctattgattgatatatagttctcatggagacaaaattttaacttga-------------attctgttttcttgct |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| | |||| |
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| T |
1525584 |
tctgaggtttttccttcatacatttctattgattgatatatagttctcatggagacacaactttaacttgagttctgtttccatattctgtttccatgct |
1525485 |
T |
|
| Q |
101 |
gtaggttattgaaacaacaaatggactcataacaaactttt-cagaatttgtttgaattgactttttaggtctgcacttactttaaaagttattctatgc |
199 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1525484 |
gtaggttactgaaacaacaaatggactcataagaaactttttcagaatttgtttgaattgactttttaggtctgcacttacttgaaaagttattctatgc |
1525385 |
T |
|
| Q |
200 |
aatgtgatgttgattttagtcacagatgaagattcttaactctatgcctgtggtcttcacatacatg |
266 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
1525384 |
aatgtgatgtggattttagtcacagatgaagattcttaactctatgcttctggtcttcacatacatg |
1525318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 1523133 - 1523024
Alignment:
| Q |
14 |
tctgaggtttttcgttcatacatttctattgattgatatatagttctcatggagacaaaattttaacttgaattctgttttcttgctgtaggttattgaa |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| |||| |
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| T |
1523133 |
tctgaggtttttccttcatacatttctattgattgatatatagttctcatggagaccaaactttaacttgaattctgttttcatgctgtaggttactgaa |
1523034 |
T |
|
| Q |
114 |
acaacaaatg |
123 |
Q |
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|||||||||| |
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| T |
1523033 |
acaacaaatg |
1523024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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