View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5437_low_3 (Length: 275)
Name: NF5437_low_3
Description: NF5437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5437_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 24984767 - 24984875
Alignment:
| Q |
149 |
accttcatcaatcaaagtgtgagcctcaacgtgcttatcctcggatttttggccatgaagcttccgggtatgaagttttttataccaacaaatttccttt |
248 |
Q |
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| T |
24984767 |
accttcatcaatcaaagtgtgagcctcaacgtgcttatcctcggatttttggccatgaagcttccgggtatgaagttttttataccaacaaattttcttt |
24984866 |
T |
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| Q |
249 |
tgtcagtta |
257 |
Q |
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| T |
24984867 |
tgtcagtta |
24984875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 24984634 - 24984731
Alignment:
| Q |
16 |
cactgatctcagtggttggaaaggagaggtaaacacaaattcacatctatatctatatatagttatttacaattatgttatcatatagtttctaatta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24984634 |
cactgatctcagtggttggaaaggagaggtaaacacaaattcacatctatatctatatatagttatttacaattatgttatcatatagtttctaatta |
24984731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 24992945 - 24993011
Alignment:
| Q |
156 |
tcaatcaaagtgtgagcctcaacgtgcttatcctcggatttttggccatgaagcttccgggtatgaa |
222 |
Q |
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| T |
24992945 |
tcaatcaaagtctgaacctcaacgtgcttttcctcggatttttggccatgaagcttccgggtatgaa |
24993011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 24992843 - 24992880
Alignment:
| Q |
16 |
cactgatctcagtggttggaaaggagaggtaaacacaa |
53 |
Q |
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| T |
24992843 |
cactgatctcagtggttggaaaggcgaggtaatcacaa |
24992880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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