View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5437_low_4 (Length: 250)
Name: NF5437_low_4
Description: NF5437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5437_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 12507731 - 12507498
Alignment:
| Q |
1 |
caaagttttattctcatacaaaattaattaatttttgtttatcaaatatagtttagtgattagaatattacactttttaaatgtaaatatttagagagtc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12507731 |
caaagttttattttcatacaaaattaattaatttttgtttatcaaatatagtttagtgattagaatattacactttttaaatgtaaatatttagagagtc |
12507632 |
T |
|
| Q |
101 |
gcgagtttaaaccaatacatttataaaaagatgtccatcaagtaaactatgctcatataccaactactttttctttatttgtgtataatgtgtaa--tgc |
198 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12507631 |
acgagtttaaaccaatacatttataaatagatgtccatcaagtaaactatgctcatataccaactactttttctttatttgtgtataatgtgtaatgtgc |
12507532 |
T |
|
| Q |
199 |
caaagtaacatatttttgggatatatggagtacc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12507531 |
caaagtaacatatttttgggatatatggagtacc |
12507498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University