View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5438-Insertion-1 (Length: 232)

Name: NF5438-Insertion-1
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5438-Insertion-1
NF5438-Insertion-1
[»] chr4 (13 HSPs)
chr4 (8-232)||(5035536-5035760)
chr4 (35-228)||(2525675-2525868)
chr4 (79-224)||(2491050-2491195)
chr4 (80-228)||(2486225-2486373)
chr4 (100-228)||(2519151-2519279)
chr4 (84-167)||(2536564-2536647)
chr4 (161-228)||(2534233-2534300)
chr4 (79-206)||(2467470-2467597)
chr4 (89-142)||(2367678-2367731)
chr4 (89-224)||(2621163-2621298)
chr4 (103-153)||(5106330-5106380)
chr4 (88-140)||(566629-566681)
chr4 (103-139)||(12121013-12121049)
[»] chr7 (1 HSPs)
chr7 (106-203)||(2576415-2576512)
[»] chr5 (2 HSPs)
chr5 (106-142)||(32268774-32268810)
chr5 (106-142)||(41900275-41900311)
[»] chr1 (1 HSPs)
chr1 (106-142)||(15837982-15838018)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 5035760 - 5035536
Alignment:
Q  8 ttgccgatcacccccgcagaataaagtctctctatcacgtctcagaacaagatatgccaatcacaaacagtagtttcaggtctctttccttcgtttcaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035760 ttgccgatcacccccgcagaataaagtctctctatcacgtctcagaacaagatatgccaatcacaaacagtagtttcaggtctctttccttcgtttcaaa 5035661  T
Q  108 acagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctttgaaaggttccctaatatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035660 acagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctttgaaaggttccctaatatt 5035561  T
Q  208 acatcactcaatatcactctcactt 232  Q
    |||||||||||||||||||||||||    
T  5035560 acatcactcaatatcactctcactt 5035536  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 2525868 - 2525675
Alignment:
Q  35 ctctctatcacgtctcagaacaagatatgccaatcacaaacagtagtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtct 134  Q
    ||||||| ||||||||| |||||  | | || ||||| ||| |||||||||| ||||| ||| |||| |||||||||||||| |||||||||||| ||||    
T  2525868 ctctctaccacgtctcaaaacaatctctacccatcaccaacggtagtttcagatctctctccctcgtctcaaaacagtttctgtccatcaccaacagtct 2525769  T
Q  135 tcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctttgaaaggttccctaatattacatcactcaatatcactctc 228  Q
    |||||||||||||| ||||||  | ||||| |||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  2525768 tcgattcttggtcacaatctccaatgcaactatcccttttcttaatcgtctctttgaaaggttccctaacattgcatcactcaatatcactctc 2525675  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 2491195 - 2491050
Alignment:
Q  79 agtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttcctta 178  Q
    |||||||||||||| ||  |||| |||||||||||||| |||||||| |||||||| ||||| | ||||| |||||| || |||||||||||||||||||    
T  2491195 agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctta 2491096  T
Q  179 gtcgtctctttgaaaggttccctaatattacatcactcaatatcac 224  Q
     |||||||||||||||||||||||| ||||||||| ||||||||||    
T  2491095 atcgtctctttgaaaggttccctaacattacatcaatcaatatcac 2491050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 228
Target Start/End: Complemental strand, 2486373 - 2486225
Alignment:
Q  80 gtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttag 179  Q
    |||| |||||||| ||| |||| |||||||||||||| ||||||||||||||||| ||||||| ||||| |||||| |||  ||||||||||||||||      
T  2486373 gttttaggtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttca 2486274  T
Q  180 tcgtctctttgaaaggttccctaatattacatcactcaatatcactctc 228  Q
    |||||||||| |  ||||||||||| ||||||| | |||||||||||||    
T  2486273 tcgtctcttttatgggttccctaatgttacatcccacaatatcactctc 2486225  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 2519279 - 2519151
Alignment:
Q  100 gtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctttgaaaggttcc 199  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||  |||| |||||| ||   ||||||||||||||||  |||||||||||| |||||||    
T  2519279 gtttcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcc 2519180  T
Q  200 ctaatattacatcactcaatatcactctc 228  Q
    | ||  ||||||||||||| |||||||||    
T  2519179 ccaacgttacatcactcaacatcactctc 2519151  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 2536647 - 2536564
Alignment:
Q  84 caggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaat 167  Q
    ||||||||| ||| || |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  2536647 caggtctctctccctcatttcaaaacagtttctgtccatcaccaaccttcttcgattcttggtcaaaatctccgaggcaacaat 2536564  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 2534300 - 2534233
Alignment:
Q  161 caacaatccctttccttagtcgtctctttgaaaggttccctaatattacatcactcaatatcactctc 228  Q
    ||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||    
T  2534300 caacaatccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctc 2534233  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 2467597 - 2467470
Alignment:
Q  79 agtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttcctta 178  Q
    ||||||| |||||| ||| |||| |||||||||||| | ||||| |||||| ||||||||||||  |||   || || || | |||||||||||| |||     
T  2467597 agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttc 2467498  T
Q  179 gtcgtctctttgaaaggttccctaatat 206  Q
     ||||||||||||||||||||| |||||    
T  2467497 atcgtctctttgaaaggttccccaatat 2467470  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 2367678 - 2367731
Alignment:
Q  89 ctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattct 142  Q
    |||||||| |||| || ||||| ||||||||||||||||||||||| |||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattct 2367731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 2621163 - 2621298
Alignment:
Q  89 ctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctt 188  Q
    |||| ||| |||| || ||||||||| | ||||||||||||||||| || ||||   ||| |||||| ||   ||| ||||||||| ||  ||| |||||    
T  2621163 ctctctccctcgtatccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 2621262  T
Q  189 tgaaaggttccctaatattacatcactcaatatcac 224  Q
     || |||||||||||||| ||||| ||||| |||||    
T  2621263 cgacaggttccctaatatcacatccctcaacatcac 2621298  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 5106330 - 5106380
Alignment:
Q  103 tcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatc 153  Q
    |||||||||||| | |||||||||||||||| |||||||| ||||| ||||    
T  5106330 tcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatc 5106380  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 566681 - 566629
Alignment:
Q  88 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 140  Q
    ||||| ||||| || || ||||||||||||||||||||| || ||||||||||    
T  566681 tctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 12121013 - 12121049
Alignment:
Q  103 tcaaaacagtttctctccatcaccaaccgtcttcgat 139  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  12121013 tcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 2576415 - 2576512
Alignment:
Q  106 aaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctttgaaaggttccctaa 203  Q
    ||||||||| | ||||||||||| ||||||||||||| ||||| |||| | ||   ||| ||||||||| || |||| ||||| |||||| |||||||    
T  2576415 aaacagtttttatccatcaccaatcgtcttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaa 2576512  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 32268810 - 32268774
Alignment:
Q  106 aaacagtttctctccatcaccaaccgtcttcgattct 142  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32268810 aaacagttactctccatcaccaaccgtcttcgattct 32268774  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 41900275 - 41900311
Alignment:
Q  106 aaacagtttctctccatcaccaaccgtcttcgattct 142  Q
    ||||||||||||||||||||||||  |||||||||||    
T  41900275 aaacagtttctctccatcaccaacactcttcgattct 41900311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 15837982 - 15838018
Alignment:
Q  106 aaacagtttctctccatcaccaaccgtcttcgattct 142  Q
    ||||||||||||||||||||||||||||| |||||||    
T  15837982 aaacagtttctctccatcaccaaccgtctccgattct 15838018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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