View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438-Insertion-2 (Length: 900)
Name: NF5438-Insertion-2
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 740; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 8 - 890
Target Start/End: Original strand, 34746530 - 34747400
Alignment:
| Q |
8 |
ataaagacgactgaaaaatgcaagccacataggttaaatatgagaaataattaaataccgaaaaatctttaacttatacaagacaagaattttacaaaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34746530 |
ataaagacgactgaaaaatgcaagccacataggttaaatatgagaaataattaaataccgaaaaatctttaacttatacaagacaagaattttacaaaga |
34746629 |
T |
|
| Q |
108 |
tttatgccagaccgttttagttggttctaatcaagcagatgtctctctaccaatgatgttgctaaaacattttcattagttctaagcttctaagagaaac |
207 |
Q |
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| T |
34746630 |
tttatgccagaccgttttagttggttctaatcaagtagatgtctctctaccaatgatgttgctaaaacattttcattagttctaagcttctaagagaaac |
34746729 |
T |
|
| Q |
208 |
aagtttcacttgttaggcacacattagctaggtaggttggtacaaaggattaaacaataattttacacagtaaatatgtatagctttatgcactacttgg |
307 |
Q |
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| T |
34746730 |
aagtttcacttgttaggcacacattagctaggtaggttggtacaaaggattaaacaataattttacacagtaaatatgtatagctttatgcactacttgg |
34746829 |
T |
|
| Q |
308 |
tgtacaatgttaaactctagggtaacgaatttgatttgacaatgatnnnnnnntatgtacatatgtatataagtatatggtttggtttgagtcccaccca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34746830 |
tgtacaatgttaaactctagggtaacgaatttgatttgacaatgataaaaaa-tatgtacatatgtatataagtatatggtttggtttgagtcccaccca |
34746928 |
T |
|
| Q |
408 |
ccctcaatatattctcaaatgctatttttgtccttgcaataataataatattgtaaaacaggtaaagcccttccatgaaggcaacattgagatacttagc |
507 |
Q |
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| T |
34746929 |
ccctcaatatattctcaaatgctatttttgtccttgcaataataataatattgtaaaacaggtaaagcccttccatgaaggcaacattgagatacttagc |
34747028 |
T |
|
| Q |
508 |
aggaattgcagggcctagtggttttggctcaaattcaacagcagaacaggttactcaaaattgctcttctttccttccttccggtctaaccgctctaatc |
607 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34747029 |
aggaattgcagggcctagtggttttggttcaaattcaacagcagaacaagttactcaaaattgctcttctttccttccttccggtctaaccgctctaatc |
34747128 |
T |
|
| Q |
608 |
accggtaagtctcacatcagtcctcttgaccttgagaattcagtctccgcagttgtgcacggatatacatcgatctgttcaccaacaaaaatctcaatac |
707 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
34747129 |
actggtaagtctcacatcggtcctcttgaccttgagaattcagtctccgcagttgtgcacggatatac----atctgttcaccaacaaaaatctc-atac |
34747223 |
T |
|
| Q |
708 |
acgcgctcacgcacacacacactttcttgaccaagttgggttatgtatggtttatactataatctacttatctttcaaattactttgtttgagtgagtct |
807 |
Q |
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||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34747224 |
acgcg----cgcacgcacacacttttttgaccaagtt-ggttatgtatggtttatactataatctacttatctttcaaattactttgtttgagtgagtct |
34747318 |
T |
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| Q |
808 |
tcttttctcatgaaggggcatgagtgagcaagcatggctgtgctaaattgtagtacttgggtaattggaa-aatcttgtatgca |
890 |
Q |
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|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| |
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| T |
34747319 |
tc-tttctcatgaa-ggacatgagtgagcaagcatggctgtgctaaattgtagtacttggttaatttgaagattcttgtatgca |
34747400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 506 - 575
Target Start/End: Original strand, 43689160 - 43689229
Alignment:
| Q |
506 |
gcaggaattgcagggcctagtggttttggctcaaattcaacagcagaacaggttactcaaaattgctctt |
575 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||| |
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| T |
43689160 |
gcaggcattgcagggcctagtggttttggctcaaattcaactgcagaacaagtcactcaacattgctctt |
43689229 |
T |
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