View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438-Insertion-5 (Length: 490)
Name: NF5438-Insertion-5
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 17347733 - 17347499
Alignment:
| Q |
8 |
agattgacattcattccatcaaagagaagttgaataatgtattgataactacaacatacatttcttctcggcataagctggaagatgtgttggtgaaagg |
107 |
Q |
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| T |
17347733 |
agattgacattcattccatcaaagagaagttgaataatgtattgataactacaacatacatttcttctcggcataagctagaagatgtgttagtgaaagg |
17347634 |
T |
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| Q |
108 |
cttatgaagcgaaagattcagtcaacttacttgcaagctagaaataataaatattcatttactagtttgagggtgaatgttgtnnnnnnntgtaatttta |
207 |
Q |
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| T |
17347633 |
cttatgaagcgaaagattcaatcaacttacttgcaagctagaaataataaatattcatttactagtttgaggg-gagtgttgtaaaaaaatgtaatttta |
17347535 |
T |
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| Q |
208 |
atagtaatttatatttgaccaattagtctattaatc |
243 |
Q |
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| T |
17347534 |
atagtaatttatatttgaccaattagtctattaatc |
17347499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 239 - 490
Target Start/End: Complemental strand, 17347478 - 17347228
Alignment:
| Q |
239 |
taatctatatatttaaaatgatacttgtacatgattcagagctttgaaataagnnnnnnnnctacgactctttttctaccttgaatgaaatatgacatga |
338 |
Q |
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| T |
17347478 |
taatctttatattcaaaatgacacttgtacatgattcagaactttgaaataagttttttttctacgactctttttctatattgaatgagatatgacatga |
17347379 |
T |
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| Q |
339 |
tcatgtgtttataagtggaaacaattatcatctttcaagtcgattttgtaaggttaagttaagtcttaatataaactctaacctagcatgtaattttgta |
438 |
Q |
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| T |
17347378 |
tcatgtgtttataagtggaaacagttatcatctttcaaaccgattttataaggttaagttaaatcttaacataaattctaacctagcatgtaa-tttgta |
17347280 |
T |
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| Q |
439 |
ctataaatgtgaaacaaattaataaattttgtcataatgcagttcattaacc |
490 |
Q |
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| T |
17347279 |
ctataaatgtgaaacaaattaataaattttgtcataatgcagttcattaacc |
17347228 |
T |
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