View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5438_high_10 (Length: 384)
Name: NF5438_high_10
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 30 - 371
Target Start/End: Complemental strand, 38053848 - 38053502
Alignment:
| Q |
30 |
aattactcctatattcgtcacctaaaaataatgtcataaaaatgtgtctcacttttgtcnnnnnnnntaatataatttgtctcacaataataa----aga |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |
|
|
| T |
38053848 |
aattactcctatattcgtcacctaaaaataatgtcataaaaatgtgtctcacttttgtcaaaaaaaataaaataatttgtctcacaataataattaaaga |
38053749 |
T |
|
| Q |
126 |
gacnnnnnnnnnnnnnntgcatgtaatgtcactaattttgaacatcca----------aattgtagatatagcttggcttaggttctctttcttgttgca |
215 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38053748 |
gacaaaaaaaaa-----tgcatgtaatgtcactaatcttgaacatccactcacgaccaaattgtagatatagcttggcttagattctctttcttgttgca |
38053654 |
T |
|
| Q |
216 |
attaaatatgctccaagacaaagattactttgtcacgttcaaagagcatttattcaaataaatcaattacgtgtgtaaatgataaatgaagttggtttga |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38053653 |
attaaatatgctccaagacaaagtttactttgtcacgttcaaagagcatttattcaaataaatcaattacgtgtgtagatgataaatgaagttggtttga |
38053554 |
T |
|
| Q |
316 |
agaactccactgactaaagatgatatgctaggtccatcatccttccctcgttcttc |
371 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38053553 |
agaactcc----actaaagatgatatgctaggtccatcatccttccctcgttcttc |
38053502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University