View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_high_11 (Length: 366)
Name: NF5438_high_11
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 22415479 - 22415271
Alignment:
| Q |
19 |
atctcttcaatgccctaggaaaataacattgttattaaatcttccatacaagaaatgttgtacactaaaatgtacaacaatgctttaatcattagacaaa |
118 |
Q |
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| T |
22415479 |
atctcttcaatgccataggaaaataacattgttattaaatcttccatacaagaaatgttgtacactaaaatgtacaacaatgctttaatcattagacaaa |
22415380 |
T |
|
| Q |
119 |
atttcaaaaaatgatgtacatgacaaaatcaattaggcaagatagatatgatgagattttgattttactatagacgcctttttaacctatgaatgatgag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22415379 |
atttcaaaaaatgatgtacatgacaaaatcaattaggcaagatagatatgatgagattttgattttactatagacgcctttttaacctatgaatgatgag |
22415280 |
T |
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| Q |
219 |
atatgatga |
227 |
Q |
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||||||||| |
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| T |
22415279 |
atatgatga |
22415271 |
T |
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