View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_high_13 (Length: 334)
Name: NF5438_high_13
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 51 - 315
Target Start/End: Complemental strand, 21725416 - 21725152
Alignment:
| Q |
51 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgttaaaactataagcacaaggaaggaggattg |
150 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
21725416 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgttcaaactataagcacaaagaaggaggattg |
21725317 |
T |
|
| Q |
151 |
ctagtaatactgctgcatcagttaatagttcattcatagaaaagttcttcaagatcaaagccatactgattgtgcttatggtttaagcttgtagtgtttt |
250 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21725316 |
ctaataatactgctgcaacagttaatagttcattcatagaaaagttcttcaagatcaaagccatactgattgtgcttatggtttaagctagtagtgtttt |
21725217 |
T |
|
| Q |
251 |
ttagtcaattaatcaaccttatatgcatttcatttcgttgtatagaaaaaggtaaatctgtgatg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21725216 |
ttagtcaattaatcaaccttatatgcatttcatttcgttgtatagcaaaaggtaaatctgtgatg |
21725152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 51 - 315
Target Start/End: Complemental strand, 21805141 - 21804877
Alignment:
| Q |
51 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgttaaaactataagcacaaggaaggaggattg |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
21805141 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgttcaaactataagcacaaagaaggaggattg |
21805042 |
T |
|
| Q |
151 |
ctagtaatactgctgcatcagttaatagttcattcatagaaaagttcttcaagatcaaagccatactgattgtgcttatggtttaagcttgtagtgtttt |
250 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21805041 |
ctaataatactgctgcaacagttaatagttcattcatagaaaagttcttcaagatcaaagccatactgattgtgcttatggtttaagctagtagtgtttt |
21804942 |
T |
|
| Q |
251 |
ttagtcaattaatcaaccttatatgcatttcatttcgttgtatagaaaaaggtaaatctgtgatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
21804941 |
ttagtcaattaatcaaccttatatgcatttcatttcgttgtatagcaaaaggtaaatctgtgatg |
21804877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 52 - 315
Target Start/End: Complemental strand, 9988548 - 9988287
Alignment:
| Q |
52 |
agaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgttaaaactataagcacaaggaaggaggattgc |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
9988548 |
agaagaacaaaattggtaagctgaagttgatacaacaaacacaaagttggaaagggaactcatctttgttcaaactataagcacaaagaaggaggattgc |
9988449 |
T |
|
| Q |
152 |
tagtaatactgctgcatcagttaatagttcattcatagaaaagttcttcaagatcaaagccatactgattgtgcttatggtttaagcttgtagtgttttt |
251 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
9988448 |
taataatactgctgcaacagttaatagttcattcata--aaagttcttcaagatcaaagccatattgattgtgcttatggtttaagctagtagtgttttt |
9988351 |
T |
|
| Q |
252 |
tagtcaattaatcaaccttatatgcatttcatttcgttgtatagaaaaaggtaaatctgtgatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9988350 |
tagtcaattaatcaaccttatatgcatttcatttcgttgtatagcaaaaggtaaatctgtgatg |
9988287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 51 - 295
Target Start/End: Original strand, 25330531 - 25330774
Alignment:
| Q |
51 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgttaaaactataagcacaaggaaggaggattg |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||| || | |||||| |
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| T |
25330531 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcagaa-gggaattcatctttgttcaaactataagcactagagaaaaggatta |
25330629 |
T |
|
| Q |
151 |
ctagtaatactgctgcatcagttaatagttcattcatagaaaagttcttcaagatcaaagccatactgattgtgcttatggtttaagcttgtagtgtttt |
250 |
Q |
| |
|
||| ||| ||||||||| ||||||||| ||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |
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| T |
25330630 |
ctactaacactgctgcagcagttaataattctgtcaaagaaaaattcttcaagatcaaagccatagtgattgtgcttatggtttaagataatagtgtttt |
25330729 |
T |
|
| Q |
251 |
ttagtcaattaatcaaccttatatgcatttcatttcgttgtatag |
295 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| || ||||| |
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| T |
25330730 |
ttagtcaattaatcaagcttatatgcatttcatttctttatatag |
25330774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 25325205 - 25325317
Alignment:
| Q |
54 |
aagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgttaaaactataagcacaaggaaggaggattgcta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||| || | |||| |||||||| ||| ||||||||| ||| |
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| T |
25325205 |
aagaacaaacttggtaagctgaagttgaagcaccaaacacaaagtaag-aagggaattcatctctgctcaaaccataagcactagggaggaggattacta |
25325303 |
T |
|
| Q |
154 |
gtaatactgctgca |
167 |
Q |
| |
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|||| ||| ||||| |
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|
| T |
25325304 |
gtaacactactgca |
25325317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 14331513 - 14331443
Alignment:
| Q |
51 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgtt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14331513 |
gagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtcggaaagggaactcatctttgtt |
14331443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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