View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_high_20 (Length: 274)
Name: NF5438_high_20
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 50748313 - 50748057
Alignment:
| Q |
18 |
cttggtatcaacaaatcctgaataaatttttccctccaacacaatagcaacttctgttgctcttggatgaaagtgaggaacattaacaccaccagcatca |
117 |
Q |
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| T |
50748313 |
cttggtatcaacaaatcctgaataaatttttccctccaacacaatagcaacttctgttgctcttggatgaaagtgaggaacattaacaccaccagcatca |
50748214 |
T |
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| Q |
118 |
aaatctgctctaacaaatgaaactccaagagtgtttaaacctggaaacacatttgaattcactcccattgaagaaaatccagtatctttgaagtttcctg |
217 |
Q |
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| T |
50748213 |
aaatctgctctaacaaatgaaactccaagagtgtttaaacctggaaacacatttgaattcactcccattgaagaaaatccagtatctttgaagtttcctg |
50748114 |
T |
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| Q |
218 |
gtagttttatacctgaaaaagtgaaatcttcaactgttgctgtggatgagtttttgc |
274 |
Q |
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| T |
50748113 |
gtagttttatacctgaaaaggtgaaatcttcaactgttgctgtggatgagtttttgc |
50748057 |
T |
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