View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_high_22 (Length: 261)
Name: NF5438_high_22
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_22 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 39953376 - 39953620
Alignment:
| Q |
15 |
tatcttcagccaagtaactagcatcctgggtatccaacaacctttttacttcttacactagcatcacctgaatttcttgcagcaacaagctataactgtt |
114 |
Q |
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| T |
39953376 |
tatcttcagccaagtaactagcattctgggtatccaacaacctttttacttcttacactagcatcacctgaatttcttgcagcaacaagctataactgtt |
39953475 |
T |
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| Q |
115 |
caagtagataacttacagcttccattaattgcttaactttttgttcactcagtctagtttcttgttttgcaagcccttgcttgagttcttcaattgtaat |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
39953476 |
caagcagataacttacagcttccattaattgcttaatttcttgttcactcaatctagttccttgttttgcaagcccttgcttgagctcttcaattgtaat |
39953575 |
T |
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| Q |
215 |
ggttccactgttgtcggtgtccatacccttaagaagaattagttt |
259 |
Q |
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| T |
39953576 |
ggttccactgttgtcggtgtccatacccttaagaagaattagttt |
39953620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 38864378 - 38864252
Alignment:
| Q |
120 |
agataacttacagcttccattaattgcttaactttttgttcactcagtctagtttcttgttttgcaagcccttgcttgagttcttcaattgtaatggttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
38864378 |
agataacttacagcttccattaattgcttaacttgttgttcactcagtctagttccttgttttacaagcccttacttgagctcttcaattgtaatggttc |
38864279 |
T |
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| Q |
220 |
cactgttgtcggtgtccatacccttaa |
246 |
Q |
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| T |
38864278 |
cactgttgtcggtgtccatacccttaa |
38864252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 38808998 - 38809124
Alignment:
| Q |
120 |
agataacttacagcttccattaattgcttaactttttgttcactcagtctagtttcttgttttgcaagcccttgcttgagttcttcaattgtaatggttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38808998 |
agataacttacagcttccattaattgcttaacttctgtttcactcagtctagttccttgttttgcaagcccttgcttgagctcttcaattgtaatggttc |
38809097 |
T |
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| Q |
220 |
cactgttgtcggtgtccatacccttaa |
246 |
Q |
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|||| ||||| |||||||||||||||| |
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| T |
38809098 |
cactattgtcagtgtccatacccttaa |
38809124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 73558 - 73678
Alignment:
| Q |
124 |
aacttacagcttccattaattgcttaactttttgttcactcagtctagtttcttgttttgcaagcccttgcttgagttcttcaattgtaatggttccact |
223 |
Q |
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|||||||||| ||||||||||||||||||| |||||| || | || | || |||||||| ||||| ||||||||||||| ||||||||||||||| |
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| T |
73558 |
aacttacagcgtccattaattgcttaacttcttgttctgaaagcttggtgccctgctttgcaagtccttgtttgagttcttcaactgtaatggttccact |
73657 |
T |
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| Q |
224 |
gttgtcggtgtccataccctt |
244 |
Q |
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|||||| |||||||| ||||| |
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| T |
73658 |
gttgtcagtgtccatcccctt |
73678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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