View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_high_23 (Length: 249)
Name: NF5438_high_23
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 25821810 - 25822042
Alignment:
| Q |
1 |
atgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacagaacaacgctttgcaataatggaactaaa |
100 |
Q |
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| T |
25821810 |
atgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacagaacaacgctttgcaataatggaactaaa |
25821909 |
T |
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| Q |
101 |
tgcacaagagaaatttgcttctttgctcacaaacccgaggagctacgcctgttgaaggct--tataccagttctgctttgccttcacctacatcaaattc |
198 |
Q |
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| T |
25821910 |
tgcacaagagaaatttgcttctttgctcacaaacccgaggagcttcgcctgttgaaggcttatataccagttctgctttgccttcacctacatcaaattc |
25822009 |
T |
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| Q |
199 |
aaattcaccaagtgcctctgcaatggattcctt |
231 |
Q |
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| T |
25822010 |
aaattcaccaagtgcctctgcaatggattcctt |
25822042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 25816029 - 25816245
Alignment:
| Q |
8 |
aaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacagaacaacgctttgcaataatggaactaaatgcacaa |
107 |
Q |
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| T |
25816029 |
aaaggggatgcatgtgaatatgcacatggtgcttttgagtccgggctgcatcctagtcgatacagaacaatgtattgcagaaatggaactgaatgcagaa |
25816128 |
T |
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| Q |
108 |
gagaaatttgcttctttgctcacaaacccgaggagctacgcctgttgaaggcttataccagttctgctttgccttcacctacatcaaattcaaattcacc |
207 |
Q |
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| T |
25816129 |
gagaagtttgcttctttgctcacaatcatgaggaacttcgcccgttgaatgctactaccagttctgctttgcctccacctacattttattcaaattcacc |
25816228 |
T |
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| Q |
208 |
aagtgcctctgcaatgg |
224 |
Q |
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| T |
25816229 |
aagtgcttctgcaatgg |
25816245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 25812788 - 25813008
Alignment:
| Q |
8 |
aaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacagaacaacgctttgcaataatggaactaaatgcacaa |
107 |
Q |
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||||||||| | ||| |||||||||||||| ||||||| | |||||| ||||| | || ||| | ||||| ||||||||| ||| ||| | |||||| | |
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| T |
25812788 |
aaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatccagctcaatatataacaaggctttgcaaggatgaaaccagatgcacca |
25812887 |
T |
|
| Q |
108 |
gagaaatttgcttctttgctcacaaacccgaggagctacgcctgttgaaggcttataccagttctgctttgccttcacctacatcaaattcaaattcacc |
207 |
Q |
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| T |
25812888 |
gaagggtttgcttttttgctcacaaaccagaggagcttcgaccgttatatgcttctaccggttgtcctttgccttcacctacatcatattcaaattcacc |
25812987 |
T |
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| Q |
208 |
aagtgcctctgcaatggattc |
228 |
Q |
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|||| ||| |||||||||| |
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| T |
25812988 |
ttgtgcttcttcaatggattc |
25813008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 25818449 - 25818655
Alignment:
| Q |
1 |
atgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacagaacaacgctttgcaataatggaactaaa |
100 |
Q |
| |
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|||||| ||||||||| | ||| |||||||||||||| ||| |||| |||||| |||||||||| ||| ||||||| || |||||| ||| ||| |
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| T |
25818449 |
atgcagcaaaggggatgcttgtgaatatgcacatggtatttgcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaaggatgaaacctgc |
25818548 |
T |
|
| Q |
101 |
tgcacaagagaaatttgcttctttgctcacaaacccgaggagctacgcctgttgaaggcttataccagttctgctttgccttcacctacatcaaattcaa |
200 |
Q |
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| T |
25818549 |
tgcaccagaagcgtttgcatttttgctcacaaacccgaggagcttcgaccactgtatgattttacgggttctgcttttccttcacctacatcatattcca |
25818648 |
T |
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| Q |
201 |
attcacc |
207 |
Q |
| |
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||||||| |
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| T |
25818649 |
attcacc |
25818655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 33648003 - 33648207
Alignment:
| Q |
24 |
aatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacagaacaacgctttgcaataatggaactaaatgcacaagagaaatttgcttctt |
123 |
Q |
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|||||||||||||| ||||||| | |||||| ||||||| || ||||||||||| ||||||||| ||| ||||| |||||| ||| ||||||| || |
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| T |
33648003 |
aatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatgaaactagatgcacgagaagggtttgcttttt |
33648102 |
T |
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| Q |
124 |
tgctcacaaacccgaggagctacgcctgttgaaggcttataccagttctgctttgccttcacctacatcaaattcaaattcaccaagtgcctctgcaatg |
223 |
Q |
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|||||||| || |||||||| || | |||| | |||| |||| |||||||| | ||||||||||||||| ||||||||||||| ||||| ||| ||||| |
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| T |
33648103 |
cgctcacaagccagaggagcttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcatattcaaattcacctagtgcttcttcaatg |
33648202 |
T |
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| Q |
224 |
gattc |
228 |
Q |
| |
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||||| |
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| T |
33648203 |
gattc |
33648207 |
T |
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