View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5438_high_3 (Length: 504)
Name: NF5438_high_3
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 15 - 504
Target Start/End: Complemental strand, 34386438 - 34385949
Alignment:
| Q |
15 |
caaaggcagcggcagaagtgcttataaaaagaacactggacaacagaacaacctacaaaagtggttataaattgcagcaagacattgctaaggacacaca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34386438 |
caaaggcagcggcagaagtgcttataaaaagaacactggacaacagaacaacctacaaaagtggttataaattgcagcaagacattgctaaggacacaca |
34386339 |
T |
|
| Q |
115 |
ttaaggttgacactttttatcatggaaccataatggttggaattgcactttcttacttgttactacattccatatatttttagaattgtaaggaaattta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34386338 |
ttaaggttgacactttttatcatggaaccataatggttggaattgcactttcttacttgttactacattccatatatttttagaattgtaaggaaattta |
34386239 |
T |
|
| Q |
215 |
aaatcatatccatagttgagtgaatgttgtgaaggattcagtttcataaagtgctccacaagagttgtgaattctgaacattaatagtgatggaccacta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34386238 |
aaatcatatccatagttgagtgaatgttgtgaaggattcagtttcataaagtggtccacaagagttgtgaattctgaacattaatagtgatggaccacta |
34386139 |
T |
|
| Q |
315 |
ccattgaaatatcatgcaacataaaacgaatgtgatgtgaactatgaagagcctggatagctagcaatgtgaaaacttgcaacagagttaacaatctgat |
414 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34386138 |
acattgaaatatcatgcaacataaaacaaatgtgatgtgaaatatgaagagcctggatagctagcaatgtgaaaacttgcaacagagttaacaatctgat |
34386039 |
T |
|
| Q |
415 |
aattgaaaccgagacaaatggaagcactaatgggaagaatcaaaccagaagaggatgaaacatcagcaaagaaagcaactgcagtgctga |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34386038 |
aattgaaaccgagacaaatggaagcactaatgggaagaatcaaaccagaagaggatgaaacatcagcaaagaaagcaactgcagtgctga |
34385949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 24177945 - 24177995
Alignment:
| Q |
264 |
agtgctccacaagagttgtgaattctgaacattaatagtgatggaccacta |
314 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
24177945 |
agtggtccacaagatttgtgaatcatgaacattaataatgatggaccacta |
24177995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University