View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_high_5 (Length: 477)
Name: NF5438_high_5
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 42947259 - 42947711
Alignment:
| Q |
19 |
tttagagtataggtccattctatttctnnnnnnntggagttccattactatataattttatgtgtgtacaagtgttcttcatttcttttgagaaatgaga |
118 |
Q |
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| T |
42947259 |
tttagagtataggtccattctatttctaaaaaaatggagttccattactatataattttatgtgtgtataagtgttcttcatttcttttgagaaatgaga |
42947358 |
T |
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| Q |
119 |
agtatctcaactccatcattagttatatgtgtgcattgtagaacgtcaataatatgatgtcgttgaacttgaataggaccannnnnnnn-ctgaaggagt |
217 |
Q |
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| T |
42947359 |
agtatctcaactccatcattagttatatgtgtgcattgtagaacgtcaataatatgatgtcgttgaacttgaataggaccatttttttttctgaaggagt |
42947458 |
T |
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| Q |
218 |
cttttcttgacgtaaaagagaaggttatcannnnnnnnnnn-caaatatcatttatttataaatacgnnnnnnn-tatcatttttaaaacggtgtacata |
315 |
Q |
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| T |
42947459 |
cttttcttgacgtaaaagagaaggttatcattttttttctttcaaatatcatttatttataaatacgaaaaaaaatatcatttttaaaacggtgtacata |
42947558 |
T |
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| Q |
316 |
atgtgattaatccttcatttgtttatgatcatgctaccgttctttcgttgcttgtaagcaacaaacgagtttttcaaaatattccgatttcaatgttata |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42947559 |
atgtgattaatccttcatttgtttatgatcatgctaccgttctttcgttgcttgtaagcaacaaacgagtttttcaaaatattccgatttcaatgttata |
42947658 |
T |
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| Q |
416 |
taagtggcagccatacatttcatgtacccaatttgacacaattggagaattat |
468 |
Q |
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| T |
42947659 |
taagtggcagccatacatttcatgtacccaatttgacacaattggagaattat |
42947711 |
T |
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