View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5438_high_6 (Length: 461)
Name: NF5438_high_6
Description: NF5438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5438_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 27527089 - 27527460
Alignment:
| Q |
19 |
cttatggaggtggtttgggactgagatcaacaagattaatgaatgtaagcatctatgttccatctctgctggatgatgatgctcaacctgaatgatgaat |
118 |
Q |
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| T |
27527089 |
cttatggaggtggtttaggactgagatcaacaagattaatgaatgtaagcatctatgttccatctttgctggatgatgatgctcaacctgaatgatgaat |
27527188 |
T |
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| Q |
119 |
gaaaaatgctttgtagaatcatatttatatggattgtgtgtgtctggattttaaggatgtgctaaattttatgaccatacaatacttcctctaaaataat |
218 |
Q |
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| T |
27527189 |
ggaaaatgctttgtagaatcatatttatatggattgtgtgtgtctggatttaaaggatgtgctaaattttatgaccatacaatacttcctctaaaataat |
27527288 |
T |
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| Q |
219 |
atttatttaaaaagaaaaaggaggaggattgcaaagttaaactcgccctattacctattttcacccttaatggacgcagattgcacttaagtgtcataat |
318 |
Q |
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| T |
27527289 |
atttatttaagaagaaaaaggaggaggattgcaaagctaaactcggcctattacctattttcacccttaatggacgcagattgcacttaagtgtcataat |
27527388 |
T |
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| Q |
319 |
atcacatgacattagtcaatccaattgtgacacatgacaatgtaattttttaaaacataaagggttgtgaaa |
390 |
Q |
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| T |
27527389 |
atcacataacataagtcaatccaattgtgacacatgacaatgtaattttttaaaacataaagggttgtgaaa |
27527460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 27527513 - 27527572
Alignment:
| Q |
390 |
atataacatttctgttgtaatgtcactaaagtgcaatttaatggacgctattttgatgatgt |
451 |
Q |
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| T |
27527513 |
atataacatttctgtt--aatgtcactaaagtgcaattcaatggacgctactttaatgatgt |
27527572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 33107090 - 33107152
Alignment:
| Q |
297 |
gattgcacttaagtgtcataatatcacatgacattagtcaatccaattgtgacacatgacaat |
359 |
Q |
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| T |
33107090 |
gattgcacttttgtgacataatgtcatatgacattcgtcaattcaagtgtgacacatgacaat |
33107152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 519778 - 519688
Alignment:
| Q |
297 |
gattgcacttaagtgtcataatatcacatgacattagtcaatccaattgtgacacatgacaatgtaattttttaaaacataaagggttgtg |
387 |
Q |
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| T |
519778 |
gattgcattttagtgacataatatcacaagacattgaccaatccaattgcgacatgtgacaatgtaaaatttttaaacataaaaggttgtg |
519688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 379
Target Start/End: Original strand, 36789412 - 36789495
Alignment:
| Q |
296 |
agattgcacttaagtgtcataatatcacatgacattagtcaatccaattgtgacacatgacaatgtaattttttaaaacataaa |
379 |
Q |
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| T |
36789412 |
agattgcacttatgtgacataatgtcacgtgacattcgtcaatttaaatgtgacacgtgacaatacaatttgtttaaacataaa |
36789495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 379
Target Start/End: Complemental strand, 41703542 - 41703459
Alignment:
| Q |
296 |
agattgcacttaagtgtcataatatcacatgacattagtcaatccaattgtgacacatgacaatgtaattttttaaaacataaa |
379 |
Q |
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| T |
41703542 |
agattgcacttatgtgacataatgtcacatgacattggccaattcaagttcgacatgtgacaatataatttttttaaacataaa |
41703459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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